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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454072 (26 seq.)
>C171083811
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
833600
833673
+
Cys
GCA
-
¡û
>C171094223
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
770816
770889
+
Cys
GCA
-
¡û
>WENV180655651
OCVV010468298
[OCVV] gut metagenome; gut
93
166
+
Cys
GCA
[ENA]
¡û
>WENV180655652
OCVV010468298
[OCVV] gut metagenome; gut
93
166
+
Cys
GCA
[ENA]
¡û
>WENV180886888
ODME01274820
[ODME] human metagenome; G_DNA_Stool
52
125
+
Cys
GCA
[ENA]
¡û
>WENV181149661
OEHT01174019
[OEHT] human metagenome; G_DNA_Stool
63
136
+
Cys
GCA
[ENA]
¡û
>WENV181883818
OGXI01014592
[OGXI] human gut metagenome; faeces
2783
2856
+
Cys
GCA
[ENA]
¡û
>WENV181929332
OGYO01019248
[OGYO] human gut metagenome; faeces
2165
2092
-
Cys
GCA
[ENA]
¡û
>WENV182885853
OKSC01032785
[OKSC] human gut metagenome; faeces
1360
1287
-
Cys
GCA
[ENA]
¡û
>WENV170068419
CDZP01005566
[CDZP] gut metagenome; human stools
1388
1315
-
Cys
GCA
[ENA]
¡û
>WENV170110783
CECF01044519
[CECF] gut metagenome; human stools
237
310
+
Cys
GCA
[ENA]
¡û
>W09119214
ACDP01000043
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
81180
81107
-
Cys
GCA
[ENA]
¡û
>W09119255
ACDQ01000011
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
249668
249595
-
Cys
GCA
[ENA]
¡û
>W2010264362
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
1591925
1591852
-
Cys
GCA
[ENA]
¡û
>W2010288958
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
1570162
1570089
-
Cys
GCA
[ENA]
¡û
>C201107546
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
1916532
1916459
-
Cys
GCA
-
¡û
>C231399296
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
617974
618047
+
Cys
GCA
-
¡û
>C231399360
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
1517564
1517491
-
Cys
GCA
-
¡û
>C231399388
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
1032996
1033069
+
Cys
GCA
-
¡û
>C231399432
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
849761
849834
+
Cys
GCA
-
¡û
>C231399504
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
1476341
1476268
-
Cys
GCA
-
¡û
>C231399527
CP098248
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-1 [CP098248]
578272
578345
+
Cys
GCA
-
¡û
>C231399602
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
1472224
1472151
-
Cys
GCA
-
¡û
>C231399631
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
913535
913608
+
Cys
GCA
-
¡û
>C231399680
CP098251
Betaproteobacteria
Oxalobacter sp. JAC-2022 OxK [CP098251]
782555
782628
+
Cys
GCA
-
¡û
>C231399730
CP098252
Betaproteobacteria
Oxalobacter sp. JAC-2022 Va3 [CP098252]
721334
721407
+
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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