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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454073 (17 seq.)
>C171083823
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
1517717
1517790
+
Gly
CCC
-
¡û
>C171094235
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
1419089
1419162
+
Gly
CCC
-
¡û
>WENV181883663
OGXI01008830
[OGXI] human gut metagenome; faeces
1996
1923
-
Gly
CCC
[ENA]
¡û
>WENV181916180
OGYF01057731
[OGYF] human gut metagenome; faeces
537
464
-
Gly
CCC
[ENA]
¡û
>WENV181929537
OGYO01031929
[OGYO] human gut metagenome; faeces
439
512
+
Gly
CCC
[ENA]
¡û
>WENV181973263
OHAA01021789
[OHAA] human gut metagenome; faeces
1314
1387
+
Gly
CCC
[ENA]
¡û
>WENV183576032
OOCI01022066
[OOCI] human gut metagenome; human gut
1375
1302
-
Gly
CCC
[ENA]
¡û
>WENV183655289
OQWD01012424
[OQWD] human gut metagenome; human gut
550
623
+
Gly
CCC
[ENA]
¡û
>WENV170068288
CDZP01001263
[CDZP] gut metagenome; human stools
44
117
+
Gly
CCC
[ENA]
¡û
>WENV170070000
CDZQ01009639
[CDZQ] gut metagenome; human stools
9021
8948
-
Gly
CCC
[ENA]
¡û
>W09119238
ACDQ01000006
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
197358
197285
-
Gly
CCC
[ENA]
¡û
>W2010264374
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
944180
944107
-
Gly
CCC
[ENA]
¡û
>C201107558
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
1232421
1232348
-
Gly
CCC
-
¡û
>C231399308
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
1266270
1266343
+
Gly
CCC
-
¡û
>C231399372
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
861386
861313
-
Gly
CCC
-
¡û
>C231399400
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
1687040
1687113
+
Gly
CCC
-
¡û
>C231399444
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
1503804
1503877
+
Gly
CCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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