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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454096 (6 seq.)
>W131053625
ANAG01000001
Bacillota
Ligilactobacillus saerimneri 30a [ANAG]
91312
91239
-
Pro
CGG
[ENA]
¡û
>W131230490
AUHQ01000047
Bacillota
Ligilactobacillus saerimneri DSM 16049 [AUHQ]
124
197
+
Pro
CGG
[ENA]
¡û
>W2110619840
JAHLOG010000003
Bacillota
Ligilactobacillus saerimneri N69 [JAHLOG]
176110
176037
-
Pro
CGG
[ENA]
¡û
>C241120709
CP047418
Bacillota
Ligilactobacillus saerimneri 1A [CP047418]
1416849
1416776
-
Pro
CGG
-
¡û
>W1610036846
AZFP01000064
Bacillota
Ligilactobacillus saerimneri DSM 16049 [AZFP]
54
127
+
Pro
CGG
[ENA]
¡û
>W1710033885
AZFP01000064
Bacillota
Ligilactobacillus saerimneri DSM 16049 [AZFP]
54
127
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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