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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454158 (8 seq.)
>w027425
ABCE01000005
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
179663
179590
-
Trp
CCA
[ENA]
¡û
>WENV170121015
CENL01037920
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
101167
101096
-
Trp
CCA
[ENA]
¡û
>C241044019
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
2281932
2282003
+
Trp
CCA
-
¡û
>C241044513
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
2637270
2637199
-
Trp
CCA
-
¡û
>C241044537
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
2236911
2236982
+
Trp
CCA
-
¡û
>C241069926
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
2256541
2256612
+
Trp
CCA
-
¡û
>C241083596
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
1572251
1572180
-
Trp
CCA
-
¡û
>C241083639
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5442922
5442851
-
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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