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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454159 (10 seq.)
>w027457
ABCE01000044
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
25499
25424
-
Gly
CCC
[ENA]
¡û
>WENV170014951
AZIC01005120
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
3522
3451
-
Gly
CCC
[ENA]
¡û
>WENV170121140
CENL01054024
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
108643
108714
+
Gly
CCC
[ENA]
¡û
>W2012143775
VTSR01000032
Planctomycetota
Gimesia sp. JC646 [VTSR]
612202
612132
-
Gly
CCC
[ENA]
¡û
>C241044060
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
2954734
2954664
-
Gly
CCC
-
¡û
>C241044476
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1915508
1915578
+
Gly
CCC
-
¡û
>C241044542
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
2896332
2896403
+
Gly
CCC
-
¡û
>C241069931
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
2927917
2927988
+
Gly
CCC
-
¡û
>C241083555
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
774770
774840
+
Gly
CCC
-
¡û
>C241083644
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
4771253
4771182
-
Gly
CCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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