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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454160 (11 seq.)
>w027416
ABCE01000002
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
227665
227740
+
Gln
TTG
[ENA]
¡û
>WENV170015042
AZIC01019083
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
708
780
+
Gln
TTG
[ENA]
¡û
>WENV170121155
CENL01054247
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
296700
296773
+
Gln
TTG
[ENA]
¡û
>WENV170668071
LADL02000785
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
960
1032
+
Gln
TTG
[ENA]
¡û
>W2012143745
VTSR01000006
Planctomycetota
Gimesia sp. JC646 [VTSR]
160683
160611
-
Gln
TTG
[ENA]
¡û
>C241044054
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
5457634
5457562
-
Gln
TTG
-
¡û
>C241044503
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
5702175
5702103
-
Gln
TTG
-
¡û
>C241044572
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
5425953
5425880
-
Gln
TTG
-
¡û
>C241069961
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
5625594
5625521
-
Gln
TTG
-
¡û
>C241083573
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
6055268
6055340
+
Gln
TTG
-
¡û
>C241083619
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
2072465
2072538
+
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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