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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454299 (89 seq.)
>W1710786183
LJIS01000104
Actinomycetota
Rhodococcus sp. ADH [LJIS]
57441
57515
+
His
GTG
[ENA]
¡û
>W1710889277
LNAK01000141
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
47338
47264
-
His
GTG
[ENA]
¡û
>W1710899267
LNIU01000022
Actinomycetota
Prescottella equi [LNIU]
41007
40933
-
His
GTG
[ENA]
¡û
>W1710909166
LNQH01000010
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
40970
40896
-
His
GTG
[ENA]
¡û
>W1710994919
LPZM01000125
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
798
724
-
His
GTG
[ENA]
¡û
>W1711050240
LRRJ01000037
Actinomycetota
Rhodococcus qingshengii [LRRJ]
124334
124408
+
His
GTG
[ENA]
¡û
>W1711138371
LVCT01000412
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
11029
10955
-
His
GTG
[ENA]
¡û
>W1711168062
LVXC01000003
Actinomycetota
Rhodococcus qingshengii [LVXC]
651571
651645
+
His
GTG
[ENA]
¡û
>W1711179163
LWHK01000148
Actinomycetota
Rhodococcus sp. 1139 [LWHK]
41854
41780
-
His
GTG
[ENA]
¡û
>W1711252843
LYPG01000073
Actinomycetota
Rhodococcus erythropolis [LYPG]
485195
485269
+
His
GTG
[ENA]
¡û
>W1711261837
LYXB01000008
Actinomycetota
Rhodococcus qingshengii [LYXB]
204814
204888
+
His
GTG
[ENA]
¡û
>W1711351300
MDCH01000016
Actinomycetota
Rhodococcus erythropolis [MDCH]
42893
42819
-
His
GTG
[ENA]
¡û
>W1711475749
MJVD01000032
Actinomycetota
Rhodococcus erythropolis 1159 [MJVD]
41835
41761
-
His
GTG
[ENA]
¡û
>W1711518871
MLKO01000010
Actinomycetota
Rhodococcus erythropolis [MLKO]
40712
40638
-
His
GTG
[ENA]
¡û
>W1711577202
MNPP01000005
Actinomycetota
Rhodococcus sp. D-1 [MNPP]
41231
41157
-
His
GTG
[ENA]
¡û
>W1711666270
MRBQ01000026
Actinomycetota
Rhodococcus erythropolis [MRBQ]
50225
50299
+
His
GTG
[ENA]
¡û
>W1711705223
MSQF01000060
Actinomycetota
Rhodococcus sp. YL-0 [MSQF]
30344
30418
+
His
GTG
[ENA]
¡û
>W1711738426
MUBD01000026
Actinomycetota
Rhodococcus qingshengii [MUBD]
13118
13044
-
His
GTG
[ENA]
¡û
>W1711766936
MUZB01000022
Actinomycetota
Rhodococcus sp. 66b [MUZB]
37001
37075
+
His
GTG
[ENA]
¡û
>C171034411
CP014941
Actinomycetota
Rhodococcus sp. BH4 [CP014941]
4027235
4027309
+
His
GTG
-
¡û
>C171060517
CP017299
Actinomycetota
Rhodococcus sp. YL-1 [CP017299]
4014050
4014124
+
His
GTG
-
¡û
>W131087818
AODN01000072
Actinomycetota
Rhodococcus qingshengii BKS 20-40 [AODN]
54774
54700
-
His
GTG
[ENA]
¡û
>WENV180100231
OAOL01002202
[OAOL] sediment metagenome; sediment
436
363
-
His
GTG
[ENA]
¢þ
>WENV180100314
OAOM01007887
[OAOM] sediment metagenome; sediment
173
246
+
His
GTG
[ENA]
¢þ
>WENV180354863
OBNE01025375
[OBNE] groundwater metagenome; groundwater
20561
20488
-
His
GTG
[ENA]
¢þ
>W141071731
ASJJ01000008
Actinomycetota
Rhodococcus rhodochrous ATCC 17895 [ASJJ]
40582
40508
-
His
GTG
[ENA]
¡û
>W141072038
ASKF01000006
Actinomycetota
Rhodococcus erythropolis R138 [ASKF]
510695
510769
+
His
GTG
[ENA]
¡û
>W141091857
AUZK01000012
Actinomycetota
Rhodococcus erythropolis DN1 [AUZK]
179498
179572
+
His
GTG
[ENA]
¡û
>W141094455
AVCO01000041
Actinomycetota
Rhodococcus sp. P27 [AVCO]
20225
20299
+
His
GTG
[ENA]
¡û
>W141238643
BBLL01000018
Actinomycetota
Rhodococcus erythropolis [BBLL]
53620
53694
+
His
GTG
[ENA]
¡û
>WENV170730431
LULG01051289
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
318
244
-
His
GTG
[ENA]
¢þ
>WENV170761832
LUMV01027865
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
178
252
+
His
GTG
[ENA]
¢þ
>C181089318
CP023720
Actinomycetota
Rhodococcus sp. H-CA8f [CP023720]
2298279
2298206
-
His
GTG
-
¡û
>C181124588
CP025959
Actinomycetota
Rhodococcus qingshengii djl-6-2 [CP025959]
4129352
4129425
+
His
GTG
-
¡û
>C191120342
CP034152
Actinomycetota
Rhodococcus sp. NJ-530 [CP034152]
4096846
4096919
+
His
GTG
-
¡û
>W09132190
ACNO01000098
Actinomycetota
Rhodococcus erythropolis SK121 [ACNO]
40738
40664
-
His
GTG
[ENA]
¡û
>W141727263
JNCU01000025
Actinomycetota
Rhodococcus qingshengii [JNCU]
110567
110641
+
His
GTG
[ENA]
¡û
>W141755680
JNWS01000005
Actinomycetota
Rhodococcus rhodochrous [JNWS]
37956
37882
-
His
GTG
[ENA]
¡û
>W141773457
JOIL01000030
Actinomycetota
Rhodococcus erythropolis [JOIL]
50432
50506
+
His
GTG
[ENA]
¡û
>W141773509
JOIM01000023
Actinomycetota
Rhodococcus opacus [JOIM]
37491
37565
+
His
GTG
[ENA]
¡û
>W1910128886
BHXB01000001
Actinomycetota
Rhodococcus erythropolis JCM 3201 [BHXB]
4021917
4021990
+
His
GTG
[ENA]
¡û
>C141001827
CP003761
Actinomycetota
Rhodococcus erythropolis CCM2595 [CP003761]
3925947
3926021
+
His
GTG
[Ensembl]
¡û
>C09108724
AP008957
Actinomycetota
Rhodococcus erythropolis PR4 [AP008957]
4228701
4228775
+
His
GTG
[Ensembl]
¡û
>W1910637688
LQWU01000016
Actinomycetota
Rhodococcus erythropolis B7g [LQWU]
50821
50894
+
His
GTG
[ENA]
¡û
>W1910792745
MRCL01000023
Actinomycetota
Rhodococcus erythropolis ACN1 [MRCL]
57032
56959
-
His
GTG
[ENA]
¡û
>W1910910558
NHBD01000023
Actinomycetota
Rhodococcus erythropolis AV96 [NHBD]
36983
37056
+
His
GTG
[ENA]
¡û
>W1911136557
NOVD01000049
Actinomycetota
Rhodococcus qingshengii 23b-28 [NOVD]
1808
1735
-
His
GTG
[ENA]
¡û
>W1911155396
NPJZ01000001
Actinomycetota
Rhodococcus sp. OK302 [NPJZ]
5233282
5233355
+
His
GTG
[ENA]
¡û
>W1911239681
NSDY01000001
Actinomycetota
Rhodococcus sp. ACPA4 [NSDY]
37709
37636
-
His
GTG
[ENA]
¡û
>W1911647315
QAJJ01000044
Actinomycetota
Rhodococcus sp. KBW08 [QAJJ]
40697
40624
-
His
GTG
[ENA]
¡û
>W1810402530
PYHL01000002
Actinomycetota
Rhodococcus sp. AD45-ID [PYHL]
233816
233743
-
His
GTG
[ENA]
¡û
>W1810577233
QEOC01000001
Actinomycetota
Rhodococcus globerulus WS3306 [QEOC]
4197063
4197136
+
His
GTG
[ENA]
¡û
>W1810582429
QEUH01000013
Actinomycetota
Rhodococcus sp. AQ5-07 [QEUH]
47199
47126
-
His
GTG
[ENA]
¡û
>W1810870079
QUAI01000001
Actinomycetota
Rhodococcus erythropolis ATCC 15903 [QUAI]
234800
234727
-
His
GTG
[ENA]
¡û
>W1810885263
QUNE01000004
Actinomycetota
Rhodococcus sp. OK551 [QUNE]
37945
37872
-
His
GTG
[ENA]
¡û
>C151079127
CP011295
Actinomycetota
Rhodococcus erythropolis BG43 [CP011295]
3955638
3955712
+
His
GTG
[Ensembl]
¡û
>W1510091175
CEDU01000034
Actinomycetota
Rhodococcus globerulus 4J2A2 [CEDU]
258043
258117
+
His
GTG
[ENA]
¡û
>W1510115804
CFHW01000064
Actinomycetota
Rhodococcus sp. 311R [CFHW]
40909
40835
-
His
GTG
[ENA]
¡û
>W1511535426
JYOP01000002
Actinomycetota
Rhodococcus sp. AD45 [JYOP]
44161
44087
-
His
GTG
[ENA]
¡û
>W1511639787
LDPN01000071
Actinomycetota
Rhodococcus erythropolis CAS922i [LDPN]
32538
32612
+
His
GTG
[ENA]
¡û
>W1511656579
LEKE01000053
Actinomycetota
Rhodococcus sp. ARP2 [LEKE]
40810
40736
-
His
GTG
[ENA]
¡û
>W11177986
AGCF01000002
Actinomycetota
Rhodococcus erythropolis XP [AGCF]
2217376
2217450
+
His
GTG
[ENA]
¡û
>C161005731
CP007255
Actinomycetota
Rhodococcus erythropolis R138 [CP007255]
2935516
2935442
-
His
GTG
[Ensembl]
¡û
>C161045395
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
6448373
6448447
+
His
GTG
[Ensembl]
¡û
>W1610045475
BBBO01000299
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
2458
2532
+
His
GTG
[ENA]
¡û
>W1610048783
BBEK01000023
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
74363
74437
+
His
GTG
[ENA]
¡û
>W1610048823
BBEL01000007
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
139695
139769
+
His
GTG
[ENA]
¡û
>W1610050061
BBFM01000026
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
12908
12834
-
His
GTG
[ENA]
¡û
>W1610068658
BCRM01000033
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
3121
3047
-
His
GTG
[ENA]
¡û
>W1610073954
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
2105315
2105241
-
His
GTG
[ENA]
¡û
>W1610515519
FMBB01000009
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
40970
40896
-
His
GTG
[ENA]
¡û
>W1610649989
LJIS01000104
Actinomycetota
Rhodococcus sp. ADH [LJIS]
57441
57515
+
His
GTG
[ENA]
¡û
>W1610749655
LNAK01000141
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
47338
47264
-
His
GTG
[ENA]
¡û
>W1610759671
LNIU01000022
Actinomycetota
Prescottella equi [LNIU]
41007
40933
-
His
GTG
[ENA]
¡û
>W1610767525
LNQH01000010
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
40970
40896
-
His
GTG
[ENA]
¡û
>W1610849576
LPZM01000125
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
798
724
-
His
GTG
[ENA]
¡û
>W1610891369
LRRJ01000037
Actinomycetota
Rhodococcus qingshengii [LRRJ]
124334
124408
+
His
GTG
[ENA]
¡û
>W1610949411
LVCT01000412
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
11029
10955
-
His
GTG
[ENA]
¡û
>W1610978069
LVXC01000003
Actinomycetota
Rhodococcus qingshengii [LVXC]
651571
651645
+
His
GTG
[ENA]
¡û
>W1611023812
LYXB01000008
Actinomycetota
Rhodococcus qingshengii [LYXB]
204814
204888
+
His
GTG
[ENA]
¡û
>W1710042316
BBBO01000299
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
2458
2532
+
His
GTG
[ENA]
¡û
>W1710045255
BBEK01000023
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
74363
74437
+
His
GTG
[ENA]
¡û
>W1710045295
BBEL01000007
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
139695
139769
+
His
GTG
[ENA]
¡û
>W1710046460
BBFM01000026
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
12908
12834
-
His
GTG
[ENA]
¡û
>W1710066031
BCRM01000033
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
3121
3047
-
His
GTG
[ENA]
¡û
>W1710071072
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
2105315
2105241
-
His
GTG
[ENA]
¡û
>W1710071840
BCWX01000002
Actinomycetota
Rhodococcus globerulus NBRC 14531 [BCWX]
43985
43911
-
His
GTG
[ENA]
¡û
>W1710501209
FMBB01000009
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
40970
40896
-
His
GTG
[ENA]
¡û
>W1710507177
FMVB01000002
Actinomycetota
Rhodococcus erythropolis 164Chir2E [FMVB]
41136
41062
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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