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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454306 (28 seq.)
>W1711256677
LYSV01000121
Bacteroidota
Flammeovirgaceae bacterium BBD 1991-12 [LYSV]
10232
10159
-
Gln
TTG
[ENA]
¡û
>W131052844
AMZN01000024
Bacteroidota
Fulvivirga imtechensis AK7 [AMZN]
71653
71728
+
Gln
TTG
[ENA]
¡û
>W131065717
ANNU01000045
Bacteroidota
Nafulsella turpanensis ZLM-10 [ANNU]
12394
12321
-
Gln
TTG
[ENA]
¡û
>W1711510544
MLAY01000023
Bacteroidota
marine bacterium AO1-C [MLAY]
107699
107774
+
Gln
TTG
[ENA]
¡û
>W1711510545
MLAY01000023
Bacteroidota
marine bacterium AO1-C [MLAY]
107811
107884
+
Gln
TTG
[ENA]
¡û
>w022691
AAWS01000035
Bacteroidota
Microscilla marina ATCC 23134 [AAWS]
1885
1808
-
Gln
TTG
[ENA]
¡û
>w022690
AAWS01000035
Bacteroidota
Microscilla marina ATCC 23134 [AAWS]
1984
1912
-
Gln
TTG
[ENA]
¡û
>WENV170413974
CEUK01164664
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
336
409
+
Gln
TTG
[ENA]
¢þ
>WENV170418319
CEUM01033379
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4853
4926
+
Gln
TTG
[ENA]
¢þ
>WENV170438981
CEUV01006129
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19070
19143
+
Gln
TTG
[ENA]
¢þ
>WENV170519945
CEWE01263477
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1890
1817
-
Gln
TTG
[ENA]
¢þ
>WENV170608967
FUWD011188721
[FUWD] metagenome; unknown
369
294
-
Gln
TTG
[ENA]
¢þ
>WENV170898260
MDTD01123271
[MDTD] marine metagenome; seawater
1922
1849
-
Gln
TTG
[ENA]
¢þ
>W1511590377
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2802892
2802819
-
Gln
TTG
[ENA]
¡û
>W1511590378
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2802753
2802680
-
Gln
TTG
[ENA]
¡û
>W1511590379
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2802638
2802563
-
Gln
TTG
[ENA]
¡û
>W1511590380
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2802538
2802463
-
Gln
TTG
[ENA]
¡û
>W1511590381
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2802441
2802366
-
Gln
TTG
[ENA]
¡û
>W1511590382
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2802340
2802265
-
Gln
TTG
[ENA]
¡û
>W1511590383
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2802239
2802164
-
Gln
TTG
[ENA]
¡û
>C161046263
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1101961
1102034
+
Gln
TTG
-
¡û
>C161046264
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1102100
1102173
+
Gln
TTG
-
¡û
>C161046265
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1102215
1102290
+
Gln
TTG
-
¡û
>C161046266
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1102315
1102390
+
Gln
TTG
-
¡û
>C161046267
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1102412
1102487
+
Gln
TTG
-
¡û
>C161046268
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1102513
1102588
+
Gln
TTG
-
¡û
>C161046269
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1102614
1102689
+
Gln
TTG
-
¡û
>W1611019702
LYSV01000121
Bacteroidota
Flammeovirgaceae bacterium BBD 1991-12 [LYSV]
10232
10159
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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