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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454356 (123 seq.)
>WENV180123152
OASV01033871
[OASV] human gut metagenome; faeces
266
191
-
Lys
TTT
[ENA]
¢þ
>WENV180126456
OASZ01007866
[OASZ] human gut metagenome; faeces
424
349
-
Lys
TTT
[ENA]
¢þ
>WENV180139846
OATT01001213
[OATT] human gut metagenome; faeces
15005
14930
-
Lys
TTT
[ENA]
¢þ
>WENV180139985
OATT01002709
[OATT] human gut metagenome; faeces
140
215
+
Lys
TTT
[ENA]
¢þ
>WENV180141579
OATU01028550
[OATU] human gut metagenome; faeces
350
275
-
Lys
TTT
[ENA]
¢þ
>WENV180176116
OAWC01024997
[OAWC] human gut metagenome; faeces
163
238
+
Lys
TTT
[ENA]
¢þ
>WENV180197985
OBAB01047433
[OBAB] human gut metagenome; faeces
315
240
-
Lys
TTT
[ENA]
¢þ
>WENV180220485
OBAS01098289
[OBAS] human gut metagenome; human gut
26
101
+
Lys
TTT
[ENA]
¢þ
>WENV180243620
OBDJ01042999
[OBDJ] human gut metagenome; human gut
144
219
+
Lys
TTT
[ENA]
¢þ
>WENV180290532
OBIU01033874
[OBIU] human gut metagenome; human gut
129
54
-
Lys
TTT
[ENA]
¢þ
>WENV180316349
OBKI01015835
[OBKI] human gut metagenome; human gut
579
654
+
Lys
TTT
[ENA]
¢þ
>WENV180326807
OBKS01183355
[OBKS] human gut metagenome; human gut
351
276
-
Lys
TTT
[ENA]
¢þ
>WENV180462738
OBYB01048178
[OBYB] human gut metagenome; faeces
86
161
+
Lys
TTT
[ENA]
¢þ
>WENV180495248
OCAA01020109
[OCAA] human gut metagenome; faeces
267
192
-
Lys
TTT
[ENA]
¢þ
>WENV180518545
OCHD01078452
[OCHD] human gut metagenome; human gut
33
108
+
Lys
TTT
[ENA]
¢þ
>WENV180538815
OCHO01037381
[OCHO] human gut metagenome; human gut
821
746
-
Lys
TTT
[ENA]
¢þ
>WENV180608469
OCPU01054358
[OCPU] human gut metagenome; human gut
283
358
+
Lys
TTT
[ENA]
¢þ
>WENV180647189
OCSH01042952
[OCSH] human gut metagenome; human gut
337
262
-
Lys
TTT
[ENA]
¢þ
>WENV180867796
ODLK01016230
[ODLK] human metagenome; G_DNA_Stool
379
454
+
Lys
TTT
[ENA]
¢þ
>WENV180966277
ODUP01154447
[ODUP] human metagenome; G_DNA_Stool
108
33
-
Lys
TTT
[ENA]
¢þ
>WENV181072972
OEAN01082301
[OEAN] human metagenome; G_DNA_Stool
322
247
-
Lys
TTT
[ENA]
¢þ
>WENV181275763
OFGJ01047808
[OFGJ] mouse gut metagenome; faeces
273
348
+
Lys
TTT
[ENA]
¢þ
>WENV181280093
OFGN01031677
[OFGN] mouse gut metagenome; faeces
356
281
-
Lys
TTT
[ENA]
¢þ
>WENV181426927
OGCQ01019266
[OGCQ] human gut metagenome; human gut
579
654
+
Lys
TTT
[ENA]
¢þ
>WENV181442000
OGDN01036908
[OGDN] human gut metagenome; human gut
595
520
-
Lys
TTT
[ENA]
¢þ
>WENV181470805
OGEU01018891
[OGEU] metagenome; Human gut stool
1172
1097
-
Lys
TTT
[ENA]
¢þ
>WENV181478106
OGFF01014103
[OGFF] metagenome; Human gut stool
500
575
+
Lys
TTT
[ENA]
¢þ
>WENV181483426
OGFK01004395
[OGFK] metagenome; Human gut stool
350
425
+
Lys
TTT
[ENA]
¢þ
>WENV181551485
OGIN01021288
[OGIN] metagenome; Human gut stool
426
501
+
Lys
TTT
[ENA]
¢þ
>WENV181580312
OGJZ01030628
[OGJZ] metagenome; Human gut stool
22
97
+
Lys
TTT
[ENA]
¢þ
>WENV181623172
OGMH01005003
[OGMH] metagenome; Human gut stool
1072
997
-
Lys
TTT
[ENA]
¢þ
>WENV181659573
OGOE01033534
[OGOE] human gut metagenome; faeces
129
204
+
Lys
TTT
[ENA]
¢þ
>WENV181690377
OGOY01052651
[OGOY] human gut metagenome; faeces
370
445
+
Lys
TTT
[ENA]
¢þ
>WENV181715178
OGPR01041217
[OGPR] human gut metagenome; faeces
262
187
-
Lys
TTT
[ENA]
¢þ
>WENV181727234
OGPZ01047634
[OGPZ] human gut metagenome; faeces
44
119
+
Lys
TTT
[ENA]
¢þ
>WENV181732288
OGQD01022212
[OGQD] human gut metagenome; faeces
1160
1085
-
Lys
TTT
[ENA]
¢þ
>WENV181777883
OGRH01004900
[OGRH] human gut metagenome; faeces
5278
5203
-
Lys
TTT
[ENA]
¢þ
>WENV181789932
OGRO01061151
[OGRO] human gut metagenome; faeces
442
367
-
Lys
TTT
[ENA]
¢þ
>WENV181793947
OGRR01025367
[OGRR] human gut metagenome; faeces
1101
1026
-
Lys
TTT
[ENA]
¢þ
>WENV181825988
OGUL01003694
[OGUL] human gut metagenome; faeces
8646
8571
-
Lys
TTT
[ENA]
¢þ
>WENV181829357
OGUN01014706
[OGUN] human gut metagenome; faeces
402
477
+
Lys
TTT
[ENA]
¢þ
>WENV181834686
OGUR01247888
[OGUR] metagenome; Human gut stool
51
126
+
Lys
TTT
[ENA]
¢þ
>WENV181869161
OGWX01010444
[OGWX] human gut metagenome; faeces
2986
2911
-
Lys
TTT
[ENA]
¢þ
>WENV182230110
OHRK01000720
[OHRK] human gut metagenome; feces
2460
2385
-
Lys
TTT
[ENA]
¢þ
>WENV182399187
OIEN01037580
[OIEN] human gut metagenome; human gut
648
723
+
Lys
TTT
[ENA]
¢þ
>WENV182509235
OIVY01010474
[OIVY] human gut metagenome; human gut
1074
999
-
Lys
TTT
[ENA]
¢þ
>WENV182516249
OIWN01024211
[OIWN] human gut metagenome; faeces
893
818
-
Lys
TTT
[ENA]
¢þ
>WENV182706513
OJOW01012214
[OJOW] human gut metagenome; stool sample
299
374
+
Lys
TTT
[ENA]
¢þ
>WENV182876273
OKRX01037665
[OKRX] human gut metagenome; faeces
656
581
-
Lys
TTT
[ENA]
¢þ
>WENV182880070
OKRZ01078529
[OKRZ] human gut metagenome; faeces
420
345
-
Lys
TTT
[ENA]
¢þ
>WENV182931995
OKUT01012607
[OKUT] human gut metagenome; feces
28
103
+
Lys
TTT
[ENA]
¢þ
>WENV182955377
OKWC01020790
[OKWC] human gut metagenome; human gut
27
102
+
Lys
TTT
[ENA]
¢þ
>WENV182965291
OKWR01059444
[OKWR] human gut metagenome; human gut
210
285
+
Lys
TTT
[ENA]
¢þ
>WENV183094489
OLNC01020195
[OLNC] human gut metagenome; faeces
347
272
-
Lys
TTT
[ENA]
¢þ
>WENV183098100
OLNE01034165
[OLNE] human gut metagenome; faeces
266
191
-
Lys
TTT
[ENA]
¢þ
>WENV183111215
OLNO01009271
[OLNO] human gut metagenome; faeces
404
479
+
Lys
TTT
[ENA]
¢þ
>WENV183126880
OLNY01049868
[OLNY] human gut metagenome; faeces
462
387
-
Lys
TTT
[ENA]
¢þ
>WENV183131304
OLOA01026877
[OLOA] human gut metagenome; faeces
79
4
-
Lys
TTT
[ENA]
¢þ
>WENV183133037
OLOB01019541
[OLOB] human gut metagenome; faeces
773
848
+
Lys
TTT
[ENA]
¢þ
>WENV183133045
OLOB01019541
[OLOB] human gut metagenome; faeces
1500
1575
+
Lys
TTT
[ENA]
¢þ
>WENV183138456
OLOH01004482
[OLOH] human gut metagenome; faeces
129
54
-
Lys
TTT
[ENA]
¢þ
>WENV183145132
OLOL01037439
[OLOL] human gut metagenome; faeces
514
589
+
Lys
TTT
[ENA]
¢þ
>WENV183153194
OLOQ01052967
[OLOQ] human gut metagenome; faeces
259
184
-
Lys
TTT
[ENA]
¢þ
>WENV183166090
OLOX01038147
[OLOX] human gut metagenome; faeces
400
325
-
Lys
TTT
[ENA]
¢þ
>WENV183173468
OLPD01006943
[OLPD] human gut metagenome; faeces
748
823
+
Lys
TTT
[ENA]
¢þ
>WENV183187710
OLPO01053831
[OLPO] human gut metagenome; faeces
565
490
-
Lys
TTT
[ENA]
¢þ
>WENV183197514
OLPU01060761
[OLPU] human gut metagenome; faeces
51
126
+
Lys
TTT
[ENA]
¢þ
>WENV183210879
OLQC01008469
[OLQC] human gut metagenome; faeces
2453
2378
-
Lys
TTT
[ENA]
¢þ
>WENV183215808
OLQG01018928
[OLQG] human gut metagenome; faeces
628
553
-
Lys
TTT
[ENA]
¢þ
>WENV183228072
OLQQ01021972
[OLQQ] human gut metagenome; faeces
614
689
+
Lys
TTT
[ENA]
¢þ
>WENV183234129
OLQV01012339
[OLQV] human gut metagenome; faeces
522
447
-
Lys
TTT
[ENA]
¢þ
>WENV183237687
OLQY01001092
[OLQY] human gut metagenome; faeces
10693
10768
+
Lys
TTT
[ENA]
¢þ
>WENV183243309
OLRC01042089
[OLRC] human gut metagenome; faeces
288
363
+
Lys
TTT
[ENA]
¢þ
>WENV183281912
OLSC01000392
[OLSC] human gut metagenome; faeces
48365
48290
-
Lys
TTT
[ENA]
¢þ
>WENV183313426
OLVP01047739
[OLVP] human gut metagenome; faeces
80
5
-
Lys
TTT
[ENA]
¢þ
>WENV183324722
OLVY01044022
[OLVY] human gut metagenome; feces
361
286
-
Lys
TTT
[ENA]
¢þ
>WENV183433256
OMBT01010377
[OMBT] human gut metagenome; feces
158
233
+
Lys
TTT
[ENA]
¢þ
>WENV183470120
OMEJ01002180
[OMEJ] human gut metagenome; feces
2719
2794
+
Lys
TTT
[ENA]
¢þ
>WENV183532983
OOAD01036474
[OOAD] human gut metagenome; human gut
735
660
-
Lys
TTT
[ENA]
¢þ
>WENV183549698
OOAZ01007943
[OOAZ] human gut metagenome; human gut
2402
2327
-
Lys
TTT
[ENA]
¢þ
>WENV183551566
OOBI01039010
[OOBI] human gut metagenome; human gut
34
109
+
Lys
TTT
[ENA]
¢þ
>WENV183569476
OOCB01055944
[OOCB] human gut metagenome; human gut
429
354
-
Lys
TTT
[ENA]
¢þ
>WENV183584654
OOCQ01073230
[OOCQ] human gut metagenome; human gut
120
45
-
Lys
TTT
[ENA]
¢þ
>WENV183751693
PPYE01029166
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
349
424
+
Lys
TTT
[ENA]
¢þ
>WENV170690671
LFRM01355320
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
429
504
+
Lys
TTT
[ENA]
¢þ
>W10115701
ADMN01000026
Bacillota
Turicibacter sanguinis PC909 [ADMN]
179
254
+
Lys
TTT
[ENA]
¡û
>W10115709
ADMN01000044
Bacillota
Turicibacter sanguinis PC909 [ADMN]
5854
5929
+
Lys
TTT
[ENA]
¡û
>W11120198
ADMN01000026
Bacillota
Turicibacter sanguinis PC909 [ADMN]
179
254
+
Lys
TTT
[ENA]
¡û
>W11120206
ADMN01000044
Bacillota
Turicibacter sanguinis PC909 [ADMN]
5854
5929
+
Lys
TTT
[ENA]
¡û
>W11151957
AEXQ01000005
Bacillota
Turicibacter sp. HGF1 [AEXQ]
5868
5793
-
Lys
TTT
[ENA]
¡û
>W11151994
AEXQ01000135
Bacillota
Turicibacter sp. HGF1 [AEXQ]
174
249
+
Lys
TTT
[ENA]
¡û
>C161056086
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
952915
952840
-
Lys
TTT
[Ensembl]
¡û
>C161056098
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
951795
951720
-
Lys
TTT
[Ensembl]
¡û
>C161056108
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
574365
574290
-
Lys
TTT
[Ensembl]
¡û
>C161056116
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
486961
486886
-
Lys
TTT
[Ensembl]
¡û
>C161056126
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
486024
485949
-
Lys
TTT
[Ensembl]
¡û
>C161056140
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
483689
483614
-
Lys
TTT
[Ensembl]
¡û
>C161056154
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
482283
482208
-
Lys
TTT
[Ensembl]
¡û
>C161056167
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
474283
474208
-
Lys
TTT
[Ensembl]
¡û
>W1610098516
CYXW01000002
Bacillota
Turicibacter sanguinis [CYXW]
294099
294024
-
Lys
TTT
[ENA]
¡û
>W1610098526
CYXW01000002
Bacillota
Turicibacter sanguinis [CYXW]
293070
292995
-
Lys
TTT
[ENA]
¡û
>W1610098551
CYXW01000020
Bacillota
Turicibacter sanguinis [CYXW]
88
163
+
Lys
TTT
[ENA]
¡û
>W1610098563
CYXW01000032
Bacillota
Turicibacter sanguinis [CYXW]
80
5
-
Lys
TTT
[ENA]
¡û
>W1610099813
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
7250
7325
+
Lys
TTT
[ENA]
¡û
>W1610099817
CYYS01000064
Bacillota
Turicibacter sanguinis [CYYS]
6
81
+
Lys
TTT
[ENA]
¡û
>W1610099827
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
2110
2035
-
Lys
TTT
[ENA]
¡û
>W1610099849
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1242
1317
+
Lys
TTT
[ENA]
¡û
>W1610101294
CYZQ01000001
Bacillota
Turicibacter sanguinis [CYZQ]
6869
6944
+
Lys
TTT
[ENA]
¡û
>W1610101307
CYZQ01000002
Bacillota
Turicibacter sanguinis [CYZQ]
212815
212740
-
Lys
TTT
[ENA]
¡û
>W1610101317
CYZQ01000012
Bacillota
Turicibacter sanguinis [CYZQ]
83055
82980
-
Lys
TTT
[ENA]
¡û
>W1610101341
CYZQ01000050
Bacillota
Turicibacter sanguinis [CYZQ]
1559
1634
+
Lys
TTT
[ENA]
¡û
>W1710101271
CYXW01000002
Bacillota
Turicibacter sanguinis [CYXW]
294099
294024
-
Lys
TTT
[ENA]
¡û
>W1710101281
CYXW01000002
Bacillota
Turicibacter sanguinis [CYXW]
293070
292995
-
Lys
TTT
[ENA]
¡û
>W1710101306
CYXW01000020
Bacillota
Turicibacter sanguinis [CYXW]
88
163
+
Lys
TTT
[ENA]
¡û
>W1710101318
CYXW01000032
Bacillota
Turicibacter sanguinis [CYXW]
80
5
-
Lys
TTT
[ENA]
¡û
>W1710102568
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
7250
7325
+
Lys
TTT
[ENA]
¡û
>W1710102572
CYYS01000064
Bacillota
Turicibacter sanguinis [CYYS]
6
81
+
Lys
TTT
[ENA]
¡û
>W1710102582
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
2110
2035
-
Lys
TTT
[ENA]
¡û
>W1710102604
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1242
1317
+
Lys
TTT
[ENA]
¡û
>W1710104049
CYZQ01000001
Bacillota
Turicibacter sanguinis [CYZQ]
6869
6944
+
Lys
TTT
[ENA]
¡û
>W1710104062
CYZQ01000002
Bacillota
Turicibacter sanguinis [CYZQ]
212815
212740
-
Lys
TTT
[ENA]
¡û
>W1710104072
CYZQ01000012
Bacillota
Turicibacter sanguinis [CYZQ]
83055
82980
-
Lys
TTT
[ENA]
¡û
>W1710104096
CYZQ01000050
Bacillota
Turicibacter sanguinis [CYZQ]
1559
1634
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK