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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454396 (71 seq.)
>W1711088368
LSYU01000099
Gammaproteobacteria
Marichromatium gracile [LSYU]
46606
46681
+
Glu
TTC
[ENA]
¡û
>W1711088370
LSYU01000099
Gammaproteobacteria
Marichromatium gracile [LSYU]
46875
46950
+
Glu
TTC
[ENA]
¡û
>W1711129658
LUUF01000059
Gammaproteobacteria
Methylomonas methanica [LUUF]
91111
91036
-
Glu
TTC
[ENA]
¡û
>W1711129659
LUUF01000059
Gammaproteobacteria
Methylomonas methanica [LUUF]
90972
90897
-
Glu
TTC
[ENA]
¡û
>W1711129687
LUUG01000052
Gammaproteobacteria
Methylomonas methanica [LUUG]
100278
100353
+
Glu
TTC
[ENA]
¡û
>W1711129688
LUUG01000052
Gammaproteobacteria
Methylomonas methanica [LUUG]
100418
100493
+
Glu
TTC
[ENA]
¡û
>W1711129737
LUUH01000049
Gammaproteobacteria
Methylomonas methanica [LUUH]
22162
22087
-
Glu
TTC
[ENA]
¡û
>W1711129738
LUUH01000049
Gammaproteobacteria
Methylomonas methanica [LUUH]
22022
21947
-
Glu
TTC
[ENA]
¡û
>W1711129795
LUUI01000161
Gammaproteobacteria
Methylomonas lenta [LUUI]
14335
14260
-
Glu
TTC
[ENA]
¡û
>W1711129796
LUUI01000161
Gammaproteobacteria
Methylomonas lenta [LUUI]
14219
14144
-
Glu
TTC
[ENA]
¡û
>W1711129823
LUUJ01000095
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
37958
37883
-
Glu
TTC
[ENA]
¡û
>W1711129824
LUUJ01000095
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
37809
37734
-
Glu
TTC
[ENA]
¡û
>W1711129852
LUUK01000031
Gammaproteobacteria
Methylomonas koyamae [LUUK]
12627
12552
-
Glu
TTC
[ENA]
¡û
>W1711129853
LUUK01000031
Gammaproteobacteria
Methylomonas koyamae [LUUK]
12493
12418
-
Glu
TTC
[ENA]
¡û
>W1711129928
LUUL01000136
Gammaproteobacteria
Methylomonas koyamae [LUUL]
38015
37940
-
Glu
TTC
[ENA]
¡û
>W1711129929
LUUL01000136
Gammaproteobacteria
Methylomonas koyamae [LUUL]
37866
37791
-
Glu
TTC
[ENA]
¡û
>W1711494877
MKMC01000078
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
131813
131738
-
Glu
TTC
[ENA]
¡û
>W1711494878
MKMC01000078
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
131679
131604
-
Glu
TTC
[ENA]
¡û
>W131155782
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1515617
1515692
+
Glu
TTC
[ENA]
¡û
>W131155783
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1515758
1515833
+
Glu
TTC
[ENA]
¡û
>W141055238
AONC01000049
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
20829
20754
-
Glu
TTC
[ENA]
¡û
>W141219928
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
3953420
3953495
+
Glu
TTC
[ENA]
¡û
>W141219929
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
3953561
3953636
+
Glu
TTC
[ENA]
¡û
>WENV170577576
FSSH01000217
[FSSH] freshwater metagenome; drinking water
68675
68750
+
Glu
TTC
[ENA]
¢þ
>WENV170577577
FSSH01000217
[FSSH] freshwater metagenome; drinking water
68814
68889
+
Glu
TTC
[ENA]
¢þ
>C181088687
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
3493814
3493739
-
Glu
TTC
-
¡û
>C181088688
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
3493665
3493590
-
Glu
TTC
-
¡û
>C191105438
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
3404615
3404540
-
Glu
TTC
-
¡û
>C191105439
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
3404474
3404399
-
Glu
TTC
-
¡û
>W09133839
ACQQ01000028
Gammaproteobacteria
Allochromatium vinosum DSM 180 [ACQQ]
11292
11217
-
Glu
TTC
[ENA]
¡û
>W141733688
JNLB01000001
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
38137
38062
-
Glu
TTC
[ENA]
¡û
>W141733689
JNLB01000001
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
37996
37921
-
Glu
TTC
[ENA]
¡û
>W1810154942
PIZT01000069
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
354613
354688
+
Glu
TTC
[ENA]
¡û
>W1810154943
PIZT01000069
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
354754
354829
+
Glu
TTC
[ENA]
¡û
>C151016272
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
2534676
2534601
-
Glu
TTC
[Ensembl]
¡û
>C10101239
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
1049604
1049529
-
Glu
TTC
[Ensembl]
¡û
>C11114741
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4310962
4310887
-
Glu
TTC
[Ensembl]
¡û
>C11114742
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4310828
4310753
-
Glu
TTC
[Ensembl]
¡û
>W1511397863
JTDD01000017
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
82746
82821
+
Glu
TTC
[ENA]
¡û
>W1511397864
JTDD01000017
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
82885
82960
+
Glu
TTC
[ENA]
¡û
>W11176083
AFWT01000054
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
13421
13346
-
Glu
TTC
[ENA]
¡û
>W11176104
AFWU01000006
Gammaproteobacteria
Marichromatium purpuratum 984 [AFWU]
23153
23228
+
Glu
TTC
[ENA]
¡û
>W11176140
AFWV01000001
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
426004
426079
+
Glu
TTC
[ENA]
¡û
>C161072137
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
3387281
3387206
-
Glu
TTC
[Ensembl]
¡û
>C161072138
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
3387133
3387058
-
Glu
TTC
[Ensembl]
¡û
>C161072472
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
198974
198899
-
Glu
TTC
[Ensembl]
¡û
>C161072473
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
198835
198760
-
Glu
TTC
[Ensembl]
¡û
>W1610046465
BBCK01000002
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
81419
81494
+
Glu
TTC
[ENA]
¡û
>W1610046466
BBCK01000002
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
81568
81643
+
Glu
TTC
[ENA]
¡û
>W1610085789
CVPF01000173
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
9385
9310
-
Glu
TTC
[ENA]
¡û
>W1610922907
LSYU01000099
Gammaproteobacteria
Marichromatium gracile [LSYU]
46606
46681
+
Glu
TTC
[ENA]
¡û
>W1610922909
LSYU01000099
Gammaproteobacteria
Marichromatium gracile [LSYU]
46875
46950
+
Glu
TTC
[ENA]
¡û
>W1610940731
LUUF01000059
Gammaproteobacteria
Methylomonas methanica [LUUF]
91111
91036
-
Glu
TTC
[ENA]
¡û
>W1610940732
LUUF01000059
Gammaproteobacteria
Methylomonas methanica [LUUF]
90972
90897
-
Glu
TTC
[ENA]
¡û
>W1610940760
LUUG01000052
Gammaproteobacteria
Methylomonas methanica [LUUG]
100278
100353
+
Glu
TTC
[ENA]
¡û
>W1610940761
LUUG01000052
Gammaproteobacteria
Methylomonas methanica [LUUG]
100418
100493
+
Glu
TTC
[ENA]
¡û
>W1610940810
LUUH01000049
Gammaproteobacteria
Methylomonas methanica [LUUH]
22162
22087
-
Glu
TTC
[ENA]
¡û
>W1610940811
LUUH01000049
Gammaproteobacteria
Methylomonas methanica [LUUH]
22022
21947
-
Glu
TTC
[ENA]
¡û
>W1610940868
LUUI01000161
Gammaproteobacteria
Methylomonas lenta [LUUI]
14335
14260
-
Glu
TTC
[ENA]
¡û
>W1610940869
LUUI01000161
Gammaproteobacteria
Methylomonas lenta [LUUI]
14219
14144
-
Glu
TTC
[ENA]
¡û
>W1610940896
LUUJ01000095
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
37958
37883
-
Glu
TTC
[ENA]
¡û
>W1610940897
LUUJ01000095
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
37809
37734
-
Glu
TTC
[ENA]
¡û
>W1610940925
LUUK01000031
Gammaproteobacteria
Methylomonas koyamae [LUUK]
12627
12552
-
Glu
TTC
[ENA]
¡û
>W1610940926
LUUK01000031
Gammaproteobacteria
Methylomonas koyamae [LUUK]
12493
12418
-
Glu
TTC
[ENA]
¡û
>W1610941001
LUUL01000136
Gammaproteobacteria
Methylomonas koyamae [LUUL]
38015
37940
-
Glu
TTC
[ENA]
¡û
>W1610941002
LUUL01000136
Gammaproteobacteria
Methylomonas koyamae [LUUL]
37866
37791
-
Glu
TTC
[ENA]
¡û
>W1710043261
BBCK01000002
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
81419
81494
+
Glu
TTC
[ENA]
¡û
>W1710043262
BBCK01000002
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
81568
81643
+
Glu
TTC
[ENA]
¡û
>W1710090378
CVPF01000173
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
9385
9310
-
Glu
TTC
[ENA]
¡û
>W1710529451
FNNZ01000002
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
354123
354198
+
Glu
TTC
[ENA]
¡û
>W1710530583
FNOW01000004
Gammaproteobacteria
Allochromatium warmingii [FNOW]
8933
8858
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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