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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454482 (256 seq.)
>W1710785732
LJIC01000110
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
36435
36360
-
Trp
CCA
[ENA]
¡û
>W1710802940
LJYE01000103
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
55160
55085
-
Trp
CCA
[ENA]
¡û
>W1710802992
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
251784
251859
+
Trp
CCA
[ENA]
¡û
>W1710803012
LJYG01000045
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
88962
88887
-
Trp
CCA
[ENA]
¡û
>W1710854923
LLXX01000029
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
91663
91588
-
Trp
CCA
[ENA]
¡û
>W1710854962
LLXY01000005
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
9449
9374
-
Trp
CCA
[ENA]
¡û
>W1710855018
LLXZ01000027
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
63611
63686
+
Trp
CCA
[ENA]
¡û
>W1710855087
LLYA01000014
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
305
230
-
Trp
CCA
[ENA]
¡û
>W1710855140
LLYB01000057
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
150680
150755
+
Trp
CCA
[ENA]
¡û
>W1710861411
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
852556
852631
+
Trp
CCA
[ENA]
¡û
>W1710877770
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
92200
92125
-
Trp
CCA
[ENA]
¡û
>W1710891406
LNCU01000048
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
3995
3920
-
Trp
CCA
[ENA]
¡û
>W1710892775
LNEC01000017
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
155037
154962
-
Trp
CCA
[ENA]
¡û
>W1711067426
LSEF01000121
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
57616
57541
-
Trp
CCA
[ENA]
¡û
>W1711072989
LSIC01000077
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
1511
1586
+
Trp
CCA
[ENA]
¡û
>W1711124779
LUKO01000033
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
82597
82522
-
Trp
CCA
[ENA]
¡û
>W1711129596
LUUB01000064
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
4402
4477
+
Trp
CCA
[ENA]
¡û
>W1711138857
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
439298
439373
+
Trp
CCA
[ENA]
¡û
>W1711193155
LWUI01000031
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
10469
10544
+
Trp
CCA
[ENA]
¡û
>W1711206735
LXEM01000015
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
10469
10544
+
Trp
CCA
[ENA]
¡û
>W1711317149
MAXB01000001
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
283440
283515
+
Trp
CCA
[ENA]
¡û
>W1711317237
MAXC01000046
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
345255
345330
+
Trp
CCA
[ENA]
¡û
>W1711487041
MKFI01000001
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
601676
601601
-
Trp
CCA
[ENA]
¡û
>W1711505861
MKVX01000004
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
957
1032
+
Trp
CCA
[ENA]
¡û
>W1711613016
MOXO01000123
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
4238
4313
+
Trp
CCA
[ENA]
¡û
>W1711636750
MPVQ01000073
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
169359
169284
-
Trp
CCA
[ENA]
¡û
>W1711783516
MVOD01000016
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
322724
322649
-
Trp
CCA
[ENA]
¡û
>W1711795363
MWPQ01000028
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
355
430
+
Trp
CCA
[ENA]
¡û
>W1711928303
NAEX01000180
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
24502
24577
+
Trp
CCA
[ENA]
¡û
>W1711928349
NAEY01000164
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
232907
232832
-
Trp
CCA
[ENA]
¡û
>W1711928403
NAEZ01000181
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
488388
488313
-
Trp
CCA
[ENA]
¡û
>W1711928435
NAFA01000196
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
278782
278707
-
Trp
CCA
[ENA]
¡û
>W1711928494
NAFB01000189
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
159326
159251
-
Trp
CCA
[ENA]
¡û
>W1711928534
NAFC01000172
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
5978
6053
+
Trp
CCA
[ENA]
¡û
>W1711928587
NAFD01000190
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
67488
67563
+
Trp
CCA
[ENA]
¡û
>W1711928619
NAFE01000217
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
5979
6054
+
Trp
CCA
[ENA]
¡û
>W1711928675
NAFF01000108
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
5979
6054
+
Trp
CCA
[ENA]
¡û
>W1711928717
NAFG01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
5979
6054
+
Trp
CCA
[ENA]
¡û
>W1711928765
NAFH01000169
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
5979
6054
+
Trp
CCA
[ENA]
¡û
>W1711928825
NAFI01000183
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
67490
67565
+
Trp
CCA
[ENA]
¡û
>W1711928851
NAFJ01000137
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
5899
5974
+
Trp
CCA
[ENA]
¡û
>W1711928896
NAFK01000154
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
18020
18095
+
Trp
CCA
[ENA]
¡û
>W1711928971
NAFL01000286
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
131819
131894
+
Trp
CCA
[ENA]
¡û
>W1712049595
NFUH01000097
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
63121
63046
-
Trp
CCA
[ENA]
¡û
>C171021097
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
4181461
4181536
+
Trp
CCA
-
¡û
>C171064672
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
4689647
4689722
+
Trp
CCA
-
¡û
>W131164105
ARAG01000009
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
1755786
1755711
-
Trp
CCA
[ENA]
¡û
>W131164990
ARBF01000080
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
175005
175080
+
Trp
CCA
[ENA]
¡û
>W131167479
ARDH01000025
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
4537
4612
+
Trp
CCA
[ENA]
¡û
>W131170236
ARFJ01000007
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
199611
199686
+
Trp
CCA
[ENA]
¡û
>W131217334
ATWP01000046
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
3196
3121
-
Trp
CCA
[ENA]
¡û
>W131227244
AUEZ01000067
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
4412
4487
+
Trp
CCA
[ENA]
¡û
>W131227287
AUFA01000021
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
61728
61803
+
Trp
CCA
[ENA]
¡û
>W131228572
AUGA01000058
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
30486
30561
+
Trp
CCA
[ENA]
¡û
>W131228705
AUGD01000041
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
4337
4412
+
Trp
CCA
[ENA]
¡û
>W131237405
AUOJ01000241
Alphaproteobacteria
Bradyrhizobium sp. JGI 0001002-A22 [AUOJ]
15412
15487
+
Trp
CCA
[ENA]
¡û
>C003071
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
5983963
5983888
-
Trp
CCA
[Ensembl]
¡û
>C014924
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
1731511
1731586
+
Trp
CCA
[Ensembl]
¡û
>C015384
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
1475737
1475662
-
Trp
CCA
[Ensembl]
¡û
>C018955
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
3553806
3553731
-
Trp
CCA
[Ensembl]
¡û
>C019006
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3701639
3701564
-
Trp
CCA
[Ensembl]
¡û
>C019037
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
2616419
2616494
+
Trp
CCA
[Ensembl]
¡û
>w012990
AAMY01000007
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
88283
88206
-
Trp
CCA
[ENA]
¡û
>W141001302
ADOU01000072
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
270491
270416
-
Trp
CCA
[ENA]
¡û
>WENV180308548
OBJR01039871
[OBJR] soil metagenome; soil
254
179
-
Trp
CCA
[ENA]
¢þ
>WENV180376781
OBOM01090836
[OBOM] marine metagenome; Seawater
118
193
+
Trp
CCA
[ENA]
¢þ
>W141043047
AMFB01000009
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
79459
79384
-
Trp
CCA
[ENA]
¡û
>w001291
AAAF01000011
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
210375
210298
-
Trp
CCA
[ENA]
¡û
>W141063636
APJD01000002
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
50314
50389
+
Trp
CCA
[ENA]
¡û
>WENV181166952
OEIU01004820
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
204
129
-
Trp
CCA
[ENA]
¢þ
>WENV181167244
OEIU01015488
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1095
1170
+
Trp
CCA
[ENA]
¢þ
>WENV181375312
OFQY01073136
[OFQY] wastewater metagenome; Exp Tend VB 10WW
276
201
-
Trp
CCA
[ENA]
¢þ
>WENV181379384
OFRD01000998
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4131
4206
+
Trp
CCA
[ENA]
¢þ
>WENV181384762
OFRI01008801
[OFRI] wastewater metagenome; Exp Tend VB 90WW
442
517
+
Trp
CCA
[ENA]
¢þ
>WENV181385868
OFRL01000023
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
4141
4216
+
Trp
CCA
[ENA]
¢þ
>WENV181399946
OFSF01000376
[OFSF] wastewater metagenome; Exp Tend VB 100WW
11671
11746
+
Trp
CCA
[ENA]
¢þ
>W141149752
AWZU01000014
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
103956
103881
-
Trp
CCA
[ENA]
¡û
>W141150029
AXAB01000008
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
36811
36886
+
Trp
CCA
[ENA]
¡û
>W141150151
AXAD01000025
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
78516
78441
-
Trp
CCA
[ENA]
¡û
>W141150236
AXAF01000009
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
167717
167642
-
Trp
CCA
[ENA]
¡û
>W141150255
AXAG01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
238807
238882
+
Trp
CCA
[ENA]
¡û
>W141150332
AXAH01000017
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
78983
78908
-
Trp
CCA
[ENA]
¡û
>W141150708
AXAP01000009
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
173578
173653
+
Trp
CCA
[ENA]
¡û
>W141150982
AXAS01000002
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
60173
60098
-
Trp
CCA
[ENA]
¡û
>W141151068
AXAT01000401
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
1875
1950
+
Trp
CCA
[ENA]
¡û
>W141151110
AXAU01000011
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
107252
107177
-
Trp
CCA
[ENA]
¡û
>W141151139
AXAV01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
253801
253726
-
Trp
CCA
[ENA]
¡û
>W141151199
AXAW01000014
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
127928
128003
+
Trp
CCA
[ENA]
¡û
>W141151219
AXAX01000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
34911
34986
+
Trp
CCA
[ENA]
¡û
>W141151308
AXAY01000045
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
4676
4751
+
Trp
CCA
[ENA]
¡û
>W141151331
AXAZ01000026
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
4852
4927
+
Trp
CCA
[ENA]
¡û
>W141151459
AXBC01000003
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
908537
908612
+
Trp
CCA
[ENA]
¡û
>W141168847
AXVG01000014
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
379640
379565
-
Trp
CCA
[ENA]
¡û
>W141169220
AXVP01000124
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
4792
4867
+
Trp
CCA
[ENA]
¡û
>W141214001
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1072140
1072065
-
Trp
CCA
[ENA]
¡û
>W141220436
AZXU01000003
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
513213
513138
-
Trp
CCA
[ENA]
¡û
>W141233903
BAWE01000005
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
473529
473454
-
Trp
CCA
[ENA]
¡û
>W141275961
JADK01000008
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
286275
286200
-
Trp
CCA
[ENA]
¡û
>W141278097
JAFC01000008
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
209753
209678
-
Trp
CCA
[ENA]
¡û
>WENV183663114
ORJL010254908
[ORJL] groundwater metagenome; groundwater
1959
2034
+
Trp
CCA
[ENA]
¢þ
>WENV183724209
PJQE01001515
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
2261
2336
+
Trp
CCA
[ENA]
¢þ
>WENV183736608
PJUC01022452
[PJUC] soil metagenome; Soil enriched on filter paper
444
369
-
Trp
CCA
[ENA]
¢þ
>WENV183740951
PJUF01020772
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1025
950
-
Trp
CCA
[ENA]
¢þ
>WENV170706180
LNAP01001556
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1611
1536
-
Trp
CCA
[ENA]
¢þ
>WENV170706399
LNAP01002834
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8128
8203
+
Trp
CCA
[ENA]
¢þ
>WENV170706633
LNAP01004942
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5588
5663
+
Trp
CCA
[ENA]
¢þ
>WENV170709426
LNFM01000330
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
154691
154616
-
Trp
CCA
[ENA]
¢þ
>WENV170711121
LNFM01003642
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10928
10853
-
Trp
CCA
[ENA]
¢þ
>WENV170711822
LNFM01007602
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8423
8498
+
Trp
CCA
[ENA]
¢þ
>WENV170713949
LNFM01047924
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2995
2920
-
Trp
CCA
[ENA]
¢þ
>WENV170974431
MTKY01061023
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
164
89
-
Trp
CCA
[ENA]
¢þ
>W09103001
AAIS01000002
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
1109416
1109341
-
Trp
CCA
[ENA]
¡û
>W09103813
AAKZ01000002
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
363587
363662
+
Trp
CCA
[ENA]
¡û
>W09104394
AALQ01000006
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
67685
67610
-
Trp
CCA
[ENA]
¡û
>W09107617
ABJR01000016
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
1961
1886
-
Trp
CCA
[ENA]
¡û
>C181113167
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
4502124
4502199
+
Trp
CCA
-
¡û
>C181178148
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
5665776
5665851
+
Trp
CCA
-
¡û
>C181178210
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
4114513
4114438
-
Trp
CCA
-
¡û
>C181178256
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
3932801
3932726
-
Trp
CCA
-
¡û
>C181181574
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
6124012
6123937
-
Trp
CCA
-
¡û
>C181203850
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
3390335
3390410
+
Trp
CCA
-
¡û
>C191019708
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
4013236
4013161
-
Trp
CCA
-
¡û
>C191019732
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
4169934
4170009
+
Trp
CCA
-
¡û
>C191071688
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
4746482
4746407
-
Trp
CCA
-
¡û
>C191071714
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
2975542
2975617
+
Trp
CCA
-
¡û
>C191092041
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
5919605
5919530
-
Trp
CCA
-
¡û
>C191186660
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
3194260
3194185
-
Trp
CCA
-
¡û
>W141730481
JNIJ01000026
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
51908
51833
-
Trp
CCA
[ENA]
¡û
>W1910182838
BJNF01000031
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
38334
38409
+
Trp
CCA
[ENA]
¡û
>W1910183068
BJNK01000005
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
410070
409995
-
Trp
CCA
[ENA]
¡û
>W1910183115
BJNL01000012
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
69649
69574
-
Trp
CCA
[ENA]
¡û
>W1910598241
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
3624005
3624080
+
Trp
CCA
[ENA]
¡û
>W1910598971
LBJC01000081
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
97778
97703
-
Trp
CCA
[ENA]
¡û
>W1910599003
LBJM01000069
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
4439
4514
+
Trp
CCA
[ENA]
¡û
>W1910599042
LBJQ01000081
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
112444
112519
+
Trp
CCA
[ENA]
¡û
>W1910611575
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
3045446
3045371
-
Trp
CCA
[ENA]
¡û
>W1910693485
MDEP01000051
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
626494
626419
-
Trp
CCA
[ENA]
¡û
>W1910840253
MZXW01000007
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
69465
69540
+
Trp
CCA
[ENA]
¡û
>W1911219147
NRSI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
242853
242928
+
Trp
CCA
[ENA]
¡û
>W1911245289
NSJY01000016
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
424755
424680
-
Trp
CCA
[ENA]
¡û
>W1911409798
NWTE01000012
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
230530
230455
-
Trp
CCA
[ENA]
¡û
>W1911409826
NWTF01000006
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
246401
246476
+
Trp
CCA
[ENA]
¡û
>W1911409919
NWTG01000018
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
4303
4378
+
Trp
CCA
[ENA]
¡û
>W1911409991
NWTI01000002
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
368348
368423
+
Trp
CCA
[ENA]
¡û
>W1911629518
PSRR01000249
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
9071
8996
-
Trp
CCA
[ENA]
¡û
>W1911629539
PSRS01000026
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
57873
57798
-
Trp
CCA
[ENA]
¡û
>W1911629580
PSRT01000004
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
72545
72620
+
Trp
CCA
[ENA]
¡û
>W1911760587
QWVU01000066
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
37761
37686
-
Trp
CCA
[ENA]
¡û
>W1911809164
QYYC01000026
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
520
595
+
Trp
CCA
[ENA]
¡û
>W1911809225
QYYD01000014
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
151405
151330
-
Trp
CCA
[ENA]
¡û
>W1911817867
QZMV01000005
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
290904
290979
+
Trp
CCA
[ENA]
¡û
>W1810089268
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
2347222
2347297
+
Trp
CCA
[ENA]
¡û
>W1810104432
PGVG01000026
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
97663
97588
-
Trp
CCA
[ENA]
¡û
>W1810289849
PTFE01000002
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
141237
141162
-
Trp
CCA
[ENA]
¡û
>W1810367847
PVYZ01000001
Alphaproteobacteria
Rhizobium tropici NFR14 [PVYZ]
816041
815966
-
Trp
CCA
[ENA]
¡û
>W1810395537
PYCM01000429
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
2361
2286
-
Trp
CCA
[ENA]
¡û
>W1810395610
PYCN01000011
Alphaproteobacteria
Bradyrhizobium algeriense RST91 [PYCN]
40289
40364
+
Trp
CCA
[ENA]
¡û
>W1810400098
PYFV01000004
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
365585
365660
+
Trp
CCA
[ENA]
¡û
>W1810400172
PYFW01000012
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
6969
7044
+
Trp
CCA
[ENA]
¡û
>W1810400224
PYFX01000034
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
22503
22578
+
Trp
CCA
[ENA]
¡û
>W1810679428
QKQS01000013
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
588202
588127
-
Trp
CCA
[ENA]
¡û
>W1810787498
QRDT01000002
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
61798
61723
-
Trp
CCA
[ENA]
¡û
>W1810884395
QUMP01000002
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
61798
61723
-
Trp
CCA
[ENA]
¡û
>C151066536
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
4489562
4489637
+
Trp
CCA
[Ensembl]
¡û
>SRA1043979
SRR035092.205194
454 Sequencing (SRP001813)
125
200
+
Trp
CCA
[SRA]
>W10112840
ADFI01000031
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
34307
34232
-
Trp
CCA
[ENA]
¡û
>C10110767
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
3961630
3961555
-
Trp
CCA
[Ensembl]
¡û
>W1510973723
JGCL01000005
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
69329
69404
+
Trp
CCA
[ENA]
¡û
>W11116067
ADFI01000031
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
34307
34232
-
Trp
CCA
[ENA]
¡û
>C11118749
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
2317172
2317247
+
Trp
CCA
[Ensembl]
¡û
>W1511353641
JRPN01000024
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
14745
14670
-
Trp
CCA
[ENA]
¡û
>W1511507966
JXOF01000169
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
50412
50487
+
Trp
CCA
[ENA]
¡û
>W1511533285
JYMR01000049
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
111980
112055
+
Trp
CCA
[ENA]
¡û
>W1511533336
JYMS01000049
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
328081
328006
-
Trp
CCA
[ENA]
¡û
>W1511533356
JYMT01000019
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
6172
6247
+
Trp
CCA
[ENA]
¡û
>W1511533397
JYMU01000006
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
210947
210872
-
Trp
CCA
[ENA]
¡û
>W1511625952
LCZM01000229
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
37040
36965
-
Trp
CCA
[ENA]
¡û
>W1511681415
LFIP01000054
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
13887
13962
+
Trp
CCA
[ENA]
¡û
>W1511681468
LFIQ01000076
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
168941
169016
+
Trp
CCA
[ENA]
¡û
>W1511684021
LFLZ01000008
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
10383
10458
+
Trp
CCA
[ENA]
¡û
>W1511705976
LGTB01000001
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
277406
277481
+
Trp
CCA
[ENA]
¡û
>W1511706696
LGUJ01000011
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
113590
113665
+
Trp
CCA
[ENA]
¡û
>C121000466
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4466481
4466556
+
Trp
CCA
[Ensembl]
¡û
>C121000718
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
2964030
2964105
+
Trp
CCA
[Ensembl]
¡û
>C161001062
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
87711
87636
-
Trp
CCA
-
¡û
>C161017374
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1457142
1457217
+
Trp
CCA
[Ensembl]
¡û
>C161034249
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
5303625
5303550
-
Trp
CCA
-
¡û
>C161062542
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
4919620
4919545
-
Trp
CCA
[Ensembl]
¡û
>C161097190
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
3559688
3559763
+
Trp
CCA
[Ensembl]
¡û
>C161107840
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
6350225
6350300
+
Trp
CCA
-
¡û
>C161107922
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4164130
4164205
+
Trp
CCA
-
¡û
>W121036208
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
5171760
5171685
-
Trp
CCA
[ENA]
¡û
>W121036452
AHMB01000066
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
99040
99115
+
Trp
CCA
[ENA]
¡û
>W121062437
AJJK01000214
Alphaproteobacteria
Bradyrhizobium elkanii 587 [AJJK]
774
699
-
Trp
CCA
[ENA]
¡û
>W121065189
AJPV01000106
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
54085
54010
-
Trp
CCA
[ENA]
¡û
>W121065266
AJPW01000480
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
17419
17344
-
Trp
CCA
[ENA]
¡û
>W121065301
AJPX01000399
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
24425
24500
+
Trp
CCA
[ENA]
¡û
>W121065353
AJPY01000430
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
4488
4563
+
Trp
CCA
[ENA]
¡û
>W121065384
AJPZ01000186
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
36033
36108
+
Trp
CCA
[ENA]
¡û
>W121065447
AJQA01000303
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
4763
4688
-
Trp
CCA
[ENA]
¡û
>W121065474
AJQB01000137
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
16250
16175
-
Trp
CCA
[ENA]
¡û
>W121065553
AJQC01000644
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
893
968
+
Trp
CCA
[ENA]
¡û
>W121065593
AJQD01000584
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
2688
2613
-
Trp
CCA
[ENA]
¡û
>W121065633
AJQE01000231
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
4064
4139
+
Trp
CCA
[ENA]
¡û
>W121065684
AJQF01000376
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
3233
3308
+
Trp
CCA
[ENA]
¡û
>W121065744
AJQG01000307
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
1983
1908
-
Trp
CCA
[ENA]
¡û
>W121065786
AJQH01000292
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
5290
5365
+
Trp
CCA
[ENA]
¡û
>W121065826
AJQI01000313
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
4125
4200
+
Trp
CCA
[ENA]
¡û
>W121065877
AJQJ01000283
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
17350
17275
-
Trp
CCA
[ENA]
¡û
>W121065923
AJQK01000233
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
17922
17847
-
Trp
CCA
[ENA]
¡û
>W121065971
AJQL01000289
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
28435
28510
+
Trp
CCA
[ENA]
¡û
>W121085075
AKIY01000193
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
41532
41457
-
Trp
CCA
[ENA]
¡û
>W1610049400
BBEX01000444
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
2596
2671
+
Trp
CCA
[ENA]
¡û
>W1610514445
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
143342
143417
+
Trp
CCA
[ENA]
¡û
>W1610514606
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
259867
259792
-
Trp
CCA
[ENA]
¡û
>W1610549168
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1558949
1558874
-
Trp
CCA
[ENA]
¡û
>W1610550289
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2348060
2348135
+
Trp
CCA
[ENA]
¡û
>W1610649538
LJIC01000110
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
36435
36360
-
Trp
CCA
[ENA]
¡û
>W1610666797
LJYE01000103
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
55160
55085
-
Trp
CCA
[ENA]
¡û
>W1610666849
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
251784
251859
+
Trp
CCA
[ENA]
¡û
>W1610666869
LJYG01000045
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
88962
88887
-
Trp
CCA
[ENA]
¡û
>W1610717264
LLXX01000029
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
91663
91588
-
Trp
CCA
[ENA]
¡û
>W1610717303
LLXY01000005
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
9449
9374
-
Trp
CCA
[ENA]
¡û
>W1610717359
LLXZ01000027
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
63611
63686
+
Trp
CCA
[ENA]
¡û
>W1610717428
LLYA01000014
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
305
230
-
Trp
CCA
[ENA]
¡û
>W1610717481
LLYB01000057
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
150680
150755
+
Trp
CCA
[ENA]
¡û
>W1610723757
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
852556
852631
+
Trp
CCA
[ENA]
¡û
>W1610740116
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
92200
92125
-
Trp
CCA
[ENA]
¡û
>W1610751771
LNCU01000048
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
3995
3920
-
Trp
CCA
[ENA]
¡û
>W1610753041
LNEC01000017
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
155037
154962
-
Trp
CCA
[ENA]
¡û
>W1610907996
LSEF01000121
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
57616
57541
-
Trp
CCA
[ENA]
¡û
>W1610912249
LSIC01000077
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
1511
1586
+
Trp
CCA
[ENA]
¡û
>W1610935751
LUKO01000033
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
82597
82522
-
Trp
CCA
[ENA]
¡û
>W1610940669
LUUB01000064
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
4402
4477
+
Trp
CCA
[ENA]
¡û
>W1610949865
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
439298
439373
+
Trp
CCA
[ENA]
¡û
>W1611061219
MAXB01000001
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
283440
283515
+
Trp
CCA
[ENA]
¡û
>W1611061307
MAXC01000046
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
345255
345330
+
Trp
CCA
[ENA]
¡û
>W1710045799
BBEX01000444
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
2596
2671
+
Trp
CCA
[ENA]
¡û
>W1710500135
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
143342
143417
+
Trp
CCA
[ENA]
¡û
>W1710500296
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
259867
259792
-
Trp
CCA
[ENA]
¡û
>W1710513048
FMZW01000008
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
180192
180267
+
Trp
CCA
[ENA]
¡û
>W1710516777
FNCU01000041
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
72401
72326
-
Trp
CCA
[ENA]
¡û
>W1710536600
FNTH01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FNTH]
1543043
1542968
-
Trp
CCA
[ENA]
¡û
>W1710546038
FOBX01000021
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
11798
11873
+
Trp
CCA
[ENA]
¡û
>W1710548422
FODT01000008
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
219560
219485
-
Trp
CCA
[ENA]
¡û
>W1710564290
FOQJ01000016
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
34110
34185
+
Trp
CCA
[ENA]
¡û
>W1710564422
FOQM01000007
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
53899
53824
-
Trp
CCA
[ENA]
¡û
>W1710569819
FOUS01000011
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
218186
218111
-
Trp
CCA
[ENA]
¡û
>W1710571304
FOVU01000004
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
337280
337355
+
Trp
CCA
[ENA]
¡û
>W1710578538
FPBQ01000038
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
4805
4880
+
Trp
CCA
[ENA]
¡û
>W1710594251
FSRD01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
6585667
6585742
+
Trp
CCA
[ENA]
¡û
>W1710652742
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1558949
1558874
-
Trp
CCA
[ENA]
¡û
>W1710659015
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2348060
2348135
+
Trp
CCA
[ENA]
¡û
>W1710735577
LGHK01000042
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
75677
75602
-
Trp
CCA
[ENA]
¡û
>W1710735617
LGHL01000020
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
84500
84425
-
Trp
CCA
[ENA]
¡û
>W1710735674
LGHM01000008
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
53511
53436
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
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(Sample source for ENV)
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End
Direction
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Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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