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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454519 (9 seq.)
>C181143159
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
986995
987066
+
Trp
CCA
-
¡û
>C211059773
CP043431
Bacillota
Weissella koreensis SK [CP043431]
945645
945716
+
Trp
CCA
-
¡û
>C241138627
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1551296
1551225
-
Trp
CCA
-
¡û
>C241378274
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
964980
965051
+
Trp
CCA
-
¡û
>WENV11100337
AEKF01000082
Food metagenome, Jonggazip commercial cabbage kimchi
1605
1534
-
Trp
CCA
[ENA]
¡û
>C11123743
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
922609
922680
+
Trp
CCA
[Ensembl]
¡û
>W121082008
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
95349
95420
+
Trp
CCA
[ENA]
¡û
>W1610528861
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
58592
58663
+
Trp
CCA
[ENA]
¡û
>W1710630451
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
58592
58663
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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