This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454528 (84 seq.)
>W1710860222
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
576553
576478
-
Arg
TCT
[ENA]
¡û
>W1710861349
LMDN01000007
Actinomycetota
Leifsonia sp. Root4 [LMDN]
39420
39495
+
Arg
TCT
[ENA]
¡û
>W1710863971
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
638576
638501
-
Arg
TCT
[ENA]
¡û
>W1710868841
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
665299
665374
+
Arg
TCT
[ENA]
¡û
>W1710869671
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
650065
650140
+
Arg
TCT
[ENA]
¡û
>W1710875106
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
844274
844349
+
Arg
TCT
[ENA]
¡û
>W1710875932
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
601489
601414
-
Arg
TCT
[ENA]
¡û
>W1710876026
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
349663
349738
+
Arg
TCT
[ENA]
¡û
>W1710876187
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
650109
650184
+
Arg
TCT
[ENA]
¡û
>W1711074796
LSJW01000020
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
13837
13912
+
Arg
TCT
[ENA]
¡û
>W1711173304
LWCT01000012
Actinomycetota
Plantibacter sp. H53 [LWCT]
39223
39150
-
Arg
TCT
[ENA]
¡û
>W1711173336
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
18972
19045
+
Arg
TCT
[ENA]
¡û
>W1711461535
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
140653
140728
+
Arg
TCT
[ENA]
¡û
>W1711724727
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
613466
613541
+
Arg
TCT
[ENA]
¡û
>C171073911
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
1717584
1717659
+
Arg
TCT
-
¡û
>W131087478
AOCN01000022
Actinomycetota
Leucobacter salsicius M1-8 [AOCN]
451169
451094
-
Arg
TCT
[ENA]
¡û
>W131098959
AOSO01000004
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
582232
582157
-
Arg
TCT
[ENA]
¡û
>WENV180017045
FSWJ01000767
[FSWJ] metagenome; soil
20370
20297
-
Arg
TCT
[ENA]
¢þ
>WENV180023871
FTIF01002608
[FTIF] metagenome; soil
575
648
+
Arg
TCT
[ENA]
¢þ
>WENV180695361
OCZS013381119
[OCZS] soil metagenome; soil
127
54
-
Arg
TCT
[ENA]
¢þ
>W141075428
ATAO01000206
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
166655
166728
+
Arg
TCT
[ENA]
¡û
>W141289400
JARC01000025
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
279044
279117
+
Arg
TCT
[ENA]
¡û
>W141289445
JARD01000012
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
206490
206417
-
Arg
TCT
[ENA]
¡û
>W141289489
JARE01000047
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
257510
257585
+
Arg
TCT
[ENA]
¡û
>W141289553
JARF01000036
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
222286
222211
-
Arg
TCT
[ENA]
¡û
>C181004098
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
1926587
1926514
-
Arg
TCT
-
¡û
>C181143948
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1833898
1833825
-
Arg
TCT
-
¡û
>C181143988
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1729341
1729268
-
Arg
TCT
-
¡û
>C181200424
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
1699397
1699472
+
Arg
TCT
-
¡û
>C191074622
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
1986847
1986772
-
Arg
TCT
-
¡û
>C191074865
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
2006928
2006853
-
Arg
TCT
-
¡û
>C191101013
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2594153
2594079
-
Arg
TCT
-
¡û
>C191182571
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3714564
3714491
-
Arg
TCT
-
¡û
>C191185964
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
1683118
1683193
+
Arg
TCT
-
¡û
>W1910183336
BJNQ01000003
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
159644
159719
+
Arg
TCT
[ENA]
¡û
>W1910184033
BJOG01000004
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
621482
621407
-
Arg
TCT
[ENA]
¡û
>W1910211987
FMIR01000019
Actinomycetota
Microbacterium oxydans [FMIR]
100014
100088
+
Arg
TCT
[ENA]
¡û
>W1910377783
FUKR01000036
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
188327
188401
+
Arg
TCT
[ENA]
¡û
>W1910784620
MPZN01000032
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
33669
33743
+
Arg
TCT
[ENA]
¡û
>W1911566437
PCOV01000001
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
624787
624861
+
Arg
TCT
[ENA]
¡û
>W1911566589
PCOY01000001
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
87508
87434
-
Arg
TCT
[ENA]
¡û
>W1911566984
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
648590
648664
+
Arg
TCT
[ENA]
¡û
>W1911671557
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
625458
625531
+
Arg
TCT
[ENA]
¡û
>W1810058094
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
2483461
2483388
-
Arg
TCT
[ENA]
¡û
>W1810091043
PGGU01000005
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
276279
276352
+
Arg
TCT
[ENA]
¡û
>W1810167300
PJIJ01000002
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
1078763
1078690
-
Arg
TCT
[ENA]
¡û
>W1810167727
PJIS01000002
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
139724
139797
+
Arg
TCT
[ENA]
¡û
>W1810167778
PJIT01000002
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
139724
139797
+
Arg
TCT
[ENA]
¡û
>W1810167829
PJIU01000002
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
139724
139797
+
Arg
TCT
[ENA]
¡û
>W1810167982
PJIX01000002
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
1126998
1126925
-
Arg
TCT
[ENA]
¡û
>W1810568855
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
710875
710802
-
Arg
TCT
[ENA]
¡û
>W1810569033
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
516672
516599
-
Arg
TCT
[ENA]
¡û
>W1810657176
QJHB01000013
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
24720
24647
-
Arg
TCT
[ENA]
¡û
>W1810724692
QOAY01000306
Actinomycetota
Microbacterium sp. H6 [QOAY]
129143
129218
+
Arg
TCT
[ENA]
¡û
>C151093236
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
744649
744724
+
Arg
TCT
-
¡û
>W1510085891
CDWI01000011
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
933344
933417
+
Arg
TCT
[ENA]
¡û
>W1511348046
JRKC01000056
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
10134
10061
-
Arg
TCT
[ENA]
¡û
>W1511432354
JUGL01000012
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
400040
399965
-
Arg
TCT
[ENA]
¡û
>W1511509255
JXQX01000002
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
128286
128211
-
Arg
TCT
[ENA]
¡û
>W1511528735
JYIU01000046
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
220446
220371
-
Arg
TCT
[ENA]
¡û
>W1511528773
JYIV01000030
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
383257
383330
+
Arg
TCT
[ENA]
¡û
>W1511588859
LBCR01000024
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
64337
64262
-
Arg
TCT
[ENA]
¡û
>W1610068278
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
208054
208129
+
Arg
TCT
[ENA]
¡û
>W1610590710
LDRQ01000010
Actinomycetota
Microbacterium oxydans [LDRQ]
30543
30618
+
Arg
TCT
[ENA]
¡û
>W1610722568
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
576553
576478
-
Arg
TCT
[ENA]
¡û
>W1610723695
LMDN01000007
Actinomycetota
Leifsonia sp. Root4 [LMDN]
39420
39495
+
Arg
TCT
[ENA]
¡û
>W1610726317
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
638576
638501
-
Arg
TCT
[ENA]
¡û
>W1610731187
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
665299
665374
+
Arg
TCT
[ENA]
¡û
>W1610732017
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
650065
650140
+
Arg
TCT
[ENA]
¡û
>W1610737452
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
844274
844349
+
Arg
TCT
[ENA]
¡û
>W1610738278
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
601489
601414
-
Arg
TCT
[ENA]
¡û
>W1610738372
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
349663
349738
+
Arg
TCT
[ENA]
¡û
>W1610738533
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
650109
650184
+
Arg
TCT
[ENA]
¡û
>W1610914101
LSJW01000020
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
13837
13912
+
Arg
TCT
[ENA]
¡û
>W1610981909
LWCT01000012
Actinomycetota
Plantibacter sp. H53 [LWCT]
39223
39150
-
Arg
TCT
[ENA]
¡û
>W1610981941
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
18972
19045
+
Arg
TCT
[ENA]
¡û
>W1710065651
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
208054
208129
+
Arg
TCT
[ENA]
¡û
>W1710535596
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
2120371
2120296
-
Arg
TCT
[ENA]
¡û
>W1710570911
FOVM01000002
Actinomycetota
Mycetocola miduiensis [FOVM]
300537
300610
+
Arg
TCT
[ENA]
¡û
>W1710603967
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
2019251
2019178
-
Arg
TCT
[ENA]
¡û
>W1710604017
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
1425447
1425372
-
Arg
TCT
[ENA]
¡û
>W1710608075
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
784259
784184
-
Arg
TCT
[ENA]
¡û
>W1710609332
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
601278
601351
+
Arg
TCT
[ENA]
¡û
>W1710709990
LDRQ01000010
Actinomycetota
Microbacterium oxydans [LDRQ]
30543
30618
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK