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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454611 (63 seq.)
>W1710861735
LMDV01000014
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
55688
55615
-
Gly
GCC
[ENA]
¡û
>W1710863682
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900911
900838
-
Gly
GCC
[ENA]
¡û
>W1710864914
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
540411
540338
-
Gly
GCC
[ENA]
¡û
>W1710865632
LMGV01000006
Actinomycetota
Nocardioides sp. Root614 [LMGV]
422119
422046
-
Gly
GCC
[ENA]
¡û
>W1710866327
LMHJ01000002
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
422131
422058
-
Gly
GCC
[ENA]
¡û
>W1710867150
LMIA01000012
Actinomycetota
Nocardioides sp. Root190 [LMIA]
400198
400271
+
Gly
GCC
[ENA]
¡û
>W1710867755
LMIN01000014
Actinomycetota
Nocardioides sp. Root224 [LMIN]
55688
55615
-
Gly
GCC
[ENA]
¡û
>W1710867839
LMIP01000014
Actinomycetota
Nocardioides sp. Root79 [LMIP]
380614
380687
+
Gly
GCC
[ENA]
¡û
>W1710868000
LMIT01000002
Actinomycetota
Nocardioides sp. Root240 [LMIT]
380428
380501
+
Gly
GCC
[ENA]
¡û
>W1710874048
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
1011615
1011542
-
Gly
GCC
[ENA]
¡û
>W1710874869
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123299
123372
+
Gly
GCC
[ENA]
¡û
>W1710880646
LMSM01000005
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
309103
309176
+
Gly
GCC
[ENA]
¡û
>W1710880721
LMSN01000018
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
143114
143187
+
Gly
GCC
[ENA]
¡û
>W1710880884
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749682
749609
-
Gly
GCC
[ENA]
¡û
>W1710881084
LMSU01000003
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
319480
319407
-
Gly
GCC
[ENA]
¡û
>W131190793
ASEP01000079
Actinomycetota
Nocardioides sp. CF8 [ASEP]
22084
22011
-
Gly
GCC
[ENA]
¡û
>W131227904
AUFN01000014
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
45946
46019
+
Gly
GCC
[ENA]
¡û
>WENV180000047
CZKA01000074
[CZKA] metagenome; liquid mineral medium
1965
2038
+
Gly
GCC
[ENA]
¢þ
>WENV180000072
CZKB01000008
[CZKB] metagenome; liquid mineral medium
83857
83784
-
Gly
GCC
[ENA]
¢þ
>WENV180030860
FTJN01213556
[FTJN] metagenome; soil
236
163
-
Gly
GCC
[ENA]
¢þ
>WENV180690405
OCZS010005261
[OCZS] soil metagenome; soil
2400
2473
+
Gly
GCC
[ENA]
¢þ
>WENV181223156
OFDC01002483
[OFDC] hot springs metagenome; Water
1514
1441
-
Gly
GCC
[ENA]
¢þ
>WENV183062519
OLID01029969
[OLID] seawater metagenome; Sea water
260
333
+
Gly
GCC
[ENA]
¢þ
>WENV170552294
CXWJ01053591
[CXWJ] wastewater metagenome; activated sludge
1165
1238
+
Gly
GCC
[ENA]
¢þ
>C191159460
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
3346438
3346511
+
Gly
GCC
-
¡û
>C191159909
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
2067875
2067948
+
Gly
GCC
-
¡û
>C191159912
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
2068371
2068446
+
Gly
GCC
-
¡û
>C191181592
CP040695
Actinomycetota
Nocardioides sp. S-1144 [CP040695]
2643852
2643925
+
Gly
GCC
-
¡û
>C191182469
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2032612
2032685
+
Gly
GCC
-
¡û
>C191182472
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2033137
2033212
+
Gly
GCC
-
¡û
>W141564351
JIAR01000027
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
162260
162187
-
Gly
GCC
[ENA]
¡û
>W1911798435
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
3196103
3196030
-
Gly
GCC
[ENA]
¡û
>W1810157298
PJBV01000015
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
109398
109325
-
Gly
GCC
[ENA]
¡û
>W1810427531
PYXZ01000012
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
45856
45929
+
Gly
GCC
[ENA]
¡û
>W1810462631
PZYX01000009
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
113188
113261
+
Gly
GCC
[ENA]
¡û
>W1810462663
PZYY01000003
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
441328
441401
+
Gly
GCC
[ENA]
¡û
>W1810626201
QHKX01000004
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
92385
92312
-
Gly
GCC
[ENA]
¡û
>W1610050530
BBFY01000606
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
400
473
+
Gly
GCC
[ENA]
¡û
>W1610068473
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10874
10947
+
Gly
GCC
[ENA]
¡û
>W1610724081
LMDV01000014
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
55688
55615
-
Gly
GCC
[ENA]
¡û
>W1610726028
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900911
900838
-
Gly
GCC
[ENA]
¡û
>W1610727260
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
540411
540338
-
Gly
GCC
[ENA]
¡û
>W1610727978
LMGV01000006
Actinomycetota
Nocardioides sp. Root614 [LMGV]
422119
422046
-
Gly
GCC
[ENA]
¡û
>W1610728673
LMHJ01000002
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
422131
422058
-
Gly
GCC
[ENA]
¡û
>W1610729496
LMIA01000012
Actinomycetota
Nocardioides sp. Root190 [LMIA]
400198
400271
+
Gly
GCC
[ENA]
¡û
>W1610730101
LMIN01000014
Actinomycetota
Nocardioides sp. Root224 [LMIN]
55688
55615
-
Gly
GCC
[ENA]
¡û
>W1610730185
LMIP01000014
Actinomycetota
Nocardioides sp. Root79 [LMIP]
380614
380687
+
Gly
GCC
[ENA]
¡û
>W1610730346
LMIT01000002
Actinomycetota
Nocardioides sp. Root240 [LMIT]
380428
380501
+
Gly
GCC
[ENA]
¡û
>W1610736394
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
1011615
1011542
-
Gly
GCC
[ENA]
¡û
>W1610737215
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123299
123372
+
Gly
GCC
[ENA]
¡û
>W1610742992
LMSM01000005
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
309103
309176
+
Gly
GCC
[ENA]
¡û
>W1610743067
LMSN01000018
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
143114
143187
+
Gly
GCC
[ENA]
¡û
>W1610743230
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749682
749609
-
Gly
GCC
[ENA]
¡û
>W1610743430
LMSU01000003
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
319480
319407
-
Gly
GCC
[ENA]
¡û
>W1710046929
BBFY01000606
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
400
473
+
Gly
GCC
[ENA]
¡û
>W1710065846
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10874
10947
+
Gly
GCC
[ENA]
¡û
>W1710083196
BDJE01000017
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
104764
104691
-
Gly
GCC
[ENA]
¡û
>W1710083321
BDJG01000024
Actinomycetota
Nocardioides sp. PD653 [BDJG]
118021
118094
+
Gly
GCC
[ENA]
¡û
>W1710512554
FMZM01000012
Actinomycetota
Nocardioides lianchengensis [FMZM]
60712
60785
+
Gly
GCC
[ENA]
¡û
>W1710523582
FNIC01000006
Actinomycetota
Nocardioides szechwanensis [FNIC]
110058
110131
+
Gly
GCC
[ENA]
¡û
>W1710534294
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
3503757
3503684
-
Gly
GCC
[ENA]
¡û
>W1710556306
FOKC01000014
Actinomycetota
Nocardioides alpinus [FOKC]
45247
45320
+
Gly
GCC
[ENA]
¡û
>W1710564150
FOQG01000025
Actinomycetota
Nocardioides psychrotolerans [FOQG]
19200
19127
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK