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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454725 (74 seq.)
>W1710786458
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1485
1560
+
His
GTG
[ENA]
¡û
>W1710876948
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
490
417
-
His
GTG
[ENA]
¡û
>W1710877106
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76660
76733
+
His
GTG
[ENA]
¡û
>W1710877123
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
439
514
+
His
GTG
[ENA]
¡û
>W1710882763
LMVC01000002
Bacillota
Fictibacillus sp. FJAT-27399 [LMVC]
1794217
1794142
-
His
GTG
[ENA]
¡û
>W1710909382
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1277
1350
+
His
GTG
[ENA]
¡û
>W1711116963
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
464
539
+
His
GTG
[ENA]
¡û
>W1711116993
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774294
774221
-
His
GTG
[ENA]
¡û
>W1711166804
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982800
1982727
-
His
GTG
[ENA]
¡û
>W131241565
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928285
928212
-
His
GTG
[ENA]
¡û
>W1711632640
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
887
960
+
His
GTG
[ENA]
¡û
>W1711632684
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
642
567
-
His
GTG
[ENA]
¡û
>W1711699385
MSLQ01000006
Bacillota
Alkalihalophilus pseudofirmus [MSLQ]
231706
231631
-
His
GTG
[ENA]
¡û
>W1712017228
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
767
840
+
His
GTG
[ENA]
¡û
>W1712017333
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
707
632
-
His
GTG
[ENA]
¡û
>C171040520
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
461981
462056
+
His
GTG
-
¡û
>C171040556
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162757
1162830
+
His
GTG
-
¡û
>C171072095
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
34847
34922
+
His
GTG
-
¡û
>C171072137
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
724109
724182
+
His
GTG
-
¡û
>w003638
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
279536
279459
-
His
GTG
[ENA]
¡û
>W141232103
BAUV01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAUV]
144005
144080
+
His
GTG
[ENA]
¡û
>W141232122
BAUV01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAUV]
698
771
+
His
GTG
[ENA]
¡û
>W141232158
BAUV01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAUV]
19139
19064
-
His
GTG
[ENA]
¡û
>C08004810
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704704
704777
+
His
GTG
[Ensembl]
¡û
>WENV170022534
BCQK01018547
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
567
640
+
His
GTG
[ENA]
¢þ
>W141484756
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1687446
1687373
-
His
GTG
[ENA]
¡û
>W141484770
JFYW01000005
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
90
165
+
His
GTG
[ENA]
¡û
>W141563204
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
998781
998708
-
His
GTG
[ENA]
¡û
>W141563251
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001212
1001139
-
His
GTG
[ENA]
¡û
>W141730917
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
283166
283239
+
His
GTG
[ENA]
¡û
>W141730933
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754448
2754523
+
His
GTG
[ENA]
¡û
>W141731019
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287515
2287588
+
His
GTG
[ENA]
¡û
>C141009940
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677981
678054
+
His
GTG
[Ensembl]
¡û
>C141009956
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3164111
3164186
+
His
GTG
[Ensembl]
¡û
>W1910930190
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
351390
351465
+
His
GTG
[ENA]
¡û
>W1910940958
NJAX01000021
Bacillota
Bacillus solitudinis FJAT-45086 [NJAX]
38686
38761
+
His
GTG
[ENA]
¡û
>W1910940967
NJAX01000024
Bacillota
Bacillus solitudinis FJAT-45086 [NJAX]
103881
103956
+
His
GTG
[ENA]
¡û
>W1911770658
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
743
816
+
His
GTG
[ENA]
¡û
>W1810760524
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1892880
1892807
-
His
GTG
[ENA]
¡û
>W1810760975
QPKS01000003
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
265665
265591
-
His
GTG
[ENA]
¡û
>C10102083
CP001878
Bacillota
Alkalihalophilus pseudofirmus OF4 [CP001878]
2195048
2195123
+
His
GTG
[Ensembl]
¡û
>W1511403834
JTLL01000043
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
663
588
-
His
GTG
[ENA]
¡û
>W1511686078
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
40843
40770
-
His
GTG
[ENA]
¡û
>W1511686118
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
356
431
+
His
GTG
[ENA]
¡û
>W1511699989
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
719
792
+
His
GTG
[ENA]
¡û
>C161042952
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
1498
1573
+
His
GTG
[Ensembl]
¡û
>W1610043200
BAZQ01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
144005
144080
+
His
GTG
[ENA]
¡û
>W1610043219
BAZQ01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
698
771
+
His
GTG
[ENA]
¡û
>W1610043255
BAZQ01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
19139
19064
-
His
GTG
[ENA]
¡û
>W121087096
AKKV01000024
Bacillota
Fictibacillus macauensis ZFHKF-1 [AKKV]
343665
343590
-
His
GTG
[ENA]
¡û
>W121087109
AKKV01000026
Bacillota
Fictibacillus macauensis ZFHKF-1 [AKKV]
19329
19254
-
His
GTG
[ENA]
¡û
>W1610589630
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
974
1047
+
His
GTG
[ENA]
¡û
>W1610589643
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
661
586
-
His
GTG
[ENA]
¡û
>W1610589661
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
761
834
+
His
GTG
[ENA]
¡û
>W1610589702
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
356
431
+
His
GTG
[ENA]
¡û
>W1610650313
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1485
1560
+
His
GTG
[ENA]
¡û
>W1610739294
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
490
417
-
His
GTG
[ENA]
¡û
>W1610739452
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76660
76733
+
His
GTG
[ENA]
¡û
>W1610739469
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
439
514
+
His
GTG
[ENA]
¡û
>W1610744689
LMVC01000002
Bacillota
Fictibacillus sp. FJAT-27399 [LMVC]
1794217
1794142
-
His
GTG
[ENA]
¡û
>W1610767741
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1277
1350
+
His
GTG
[ENA]
¡û
>W1610928322
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
464
539
+
His
GTG
[ENA]
¡û
>W1610928352
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774294
774221
-
His
GTG
[ENA]
¡û
>W1610977344
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982800
1982727
-
His
GTG
[ENA]
¡û
>W1710040360
BAZQ01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
144005
144080
+
His
GTG
[ENA]
¡û
>W1710040379
BAZQ01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
698
771
+
His
GTG
[ENA]
¡û
>W1710040415
BAZQ01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
19139
19064
-
His
GTG
[ENA]
¡û
>W1710511217
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1277
1350
+
His
GTG
[ENA]
¡û
>W1710523462
FNHY01000011
Bacillota
Psychrobacillus sp. OK028 [FNHY]
1611
1686
+
His
GTG
[ENA]
¡û
>W1710559208
FOML01000021
Bacillota
Bacillus sp. OV194 [FOML]
1172
1247
+
His
GTG
[ENA]
¡û
>W1710708910
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
974
1047
+
His
GTG
[ENA]
¡û
>W1710708923
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
661
586
-
His
GTG
[ENA]
¡û
>W1710708941
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
761
834
+
His
GTG
[ENA]
¡û
>W1710708982
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
356
431
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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