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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454800 (38 seq.)
>W1710906996
LNOL01000026
Betaproteobacteria
Alcaligenes faecalis [LNOL]
28795
28870
+
Lys
CTT
[ENA]
¡û
>W1710995923
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
29059
29134
+
Lys
CTT
[ENA]
¡û
>W1711710515
MSZN01000016
Betaproteobacteria
Alcaligenes faecalis [MSZN]
26967
27042
+
Lys
CTT
[ENA]
¡û
>W1711710569
MSZO01000013
Betaproteobacteria
Alcaligenes faecalis [MSZO]
90908
90833
-
Lys
CTT
[ENA]
¡û
>W1711710624
MSZP01000009
Betaproteobacteria
Alcaligenes faecalis [MSZP]
136729
136654
-
Lys
CTT
[ENA]
¡û
>W1711710680
MSZQ01000027
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
28132
28057
-
Lys
CTT
[ENA]
¡û
>W1711710697
MSZR01000004
Betaproteobacteria
Alcaligenes faecalis [MSZR]
126232
126307
+
Lys
CTT
[ENA]
¡û
>W1711711876
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
489669
489594
-
Lys
CTT
[ENA]
¡û
>C171115508
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2588349
2588424
+
Lys
CTT
-
¡û
>W131051754
AMXV01000011
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
46491
46416
-
Lys
CTT
[ENA]
¡û
>W131223049
AUBT01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
107078
107153
+
Lys
CTT
[ENA]
¡û
>W141104412
AVOG02000004
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
39424
39499
+
Lys
CTT
[ENA]
¡û
>W141237702
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
982841
982916
+
Lys
CTT
[ENA]
¡û
>WENV183733456
PJTY01002306
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
4558
4633
+
Lys
CTT
[ENA]
¢þ
>WENV170645929
JQGF01001034
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
1805
1730
-
Lys
CTT
[ENA]
¢þ
>WENV170655045
JTFN01002686
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1974
2049
+
Lys
CTT
[ENA]
¢þ
>WENV170655849
JTFN01083607
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
567
642
+
Lys
CTT
[ENA]
¢þ
>WENV170656410
JTFO01013302
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
770
695
-
Lys
CTT
[ENA]
¢þ
>WENV170656440
JTFO01015581
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
90
15
-
Lys
CTT
[ENA]
¢þ
>WENV170656888
JTFO01055448
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
13
88
+
Lys
CTT
[ENA]
¢þ
>WENV170657402
JTFO01142771
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
13
88
+
Lys
CTT
[ENA]
¢þ
>WENV170658633
JTFP01166056
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
235
160
-
Lys
CTT
[ENA]
¢þ
>C181053227
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2712151
2712226
+
Lys
CTT
-
¡û
>C181088585
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2341222
2341297
+
Lys
CTT
-
¡û
>C191085264
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
2880724
2880799
+
Lys
CTT
-
¡û
>C191091136
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1217904
1217979
+
Lys
CTT
-
¡û
>C191113952
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
3615886
3615961
+
Lys
CTT
-
¡û
>C191149622
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
511171
511246
+
Lys
CTT
-
¡û
>W1810583876
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
485051
484976
-
Lys
CTT
[ENA]
¡û
>W1511321041
JQCV01000007
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
398992
398917
-
Lys
CTT
[ENA]
¡û
>W1511537446
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
577769
577844
+
Lys
CTT
[ENA]
¡û
>C161051333
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
577769
577844
+
Lys
CTT
[Ensembl]
¡û
>W121091213
AKMR01000010
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
75823
75748
-
Lys
CTT
[ENA]
¡û
>W1610093561
CYTB01000003
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
209498
209423
-
Lys
CTT
[ENA]
¡û
>W1610766010
LNOL01000026
Betaproteobacteria
Alcaligenes faecalis [LNOL]
28795
28870
+
Lys
CTT
[ENA]
¡û
>W1610850580
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
29059
29134
+
Lys
CTT
[ENA]
¡û
>W1610921521
LSUO01000014
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
589726
589801
+
Lys
CTT
[ENA]
¡û
>W1710082539
BDHG01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
209506
209431
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK