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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454846 (33 seq.)
>W1710923837
LOCK01000094
Bacillota
Desulfitobacterium hafniense [LOCK]
142440
142515
+
Thr
TGT
[ENA]
¡û
>W1710927004
LOEW01000273
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
553
628
+
Thr
TGT
[ENA]
¡û
>W1711312232
MASS01000008
Bacillota
Desulfosporosinus sp. BG [MASS]
68185
68110
-
Thr
TGT
[ENA]
¡û
>W1711926292
NADJ01000039
Bacillota
Desulfosporosinus sp. FKB [NADJ]
200061
200136
+
Thr
TGT
[ENA]
¡û
>W1711932747
NAHZ01000027
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
137403
137328
-
Thr
TGT
[ENA]
¡û
>W131162743
AQZD01000018
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
180764
180689
-
Thr
TGT
[ENA]
¡û
>W131162819
AQZF01000007
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
415730
415805
+
Thr
TGT
[ENA]
¡û
>W131164700
ARAZ01000037
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
67714
67639
-
Thr
TGT
[ENA]
¡û
>C007784
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
968439
968514
+
Thr
TGT
[Ensembl]
¡û
>w002173
AAAW04000004
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
544524
544447
-
Thr
TGT
[ENA]
¡û
>WENV170002802
AGTN01134555
[AGTN] bioreactor metagenome; poplar biomass
91
16
-
Thr
TGT
[ENA]
¢þ
>C09103979
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
908011
908086
+
Thr
TGT
[Ensembl]
¡û
>C151016312
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
407846
407921
+
Thr
TGT
[Ensembl]
¡û
>W1511187097
JMGA01000008
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
5611
5686
+
Thr
TGT
[ENA]
¡û
>W1511646001
LDZY01000002
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
341542
341467
-
Thr
TGT
[ENA]
¡û
>W11177256
AGAF01000105
Bacillota
Desulfosporosinus sp. OT [AGAF]
67391
67316
-
Thr
TGT
[ENA]
¡û
>W11181319
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
649511
649436
-
Thr
TGT
[ENA]
¡û
>W11181402
AGJB01000005
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
207774
207849
+
Thr
TGT
[ENA]
¡û
>C121011421
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
709601
709676
+
Thr
TGT
[Ensembl]
¡û
>C121014805
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
4417697
4417772
+
Thr
TGT
[Ensembl]
¡û
>C121014872
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
3201257
3201332
+
Thr
TGT
[Ensembl]
¡û
>W121007260
AFZX01000010
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
67611
67536
-
Thr
TGT
[ENA]
¡û
>W121010354
AGJE01000009
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
10295
10370
+
Thr
TGT
[ENA]
¡û
>W121010460
AGJG01000011
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
164466
164541
+
Thr
TGT
[ENA]
¡û
>W121010516
AGJH01000003
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
160149
160224
+
Thr
TGT
[ENA]
¡û
>W121036148
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1934404
1934479
+
Thr
TGT
[ENA]
¡û
>C131003228
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
627108
627183
+
Thr
TGT
[Ensembl]
¡û
>W1610781438
LOCK01000094
Bacillota
Desulfitobacterium hafniense [LOCK]
142440
142515
+
Thr
TGT
[ENA]
¡û
>W1610784546
LOEW01000273
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
553
628
+
Thr
TGT
[ENA]
¡û
>W1710516475
FNCP01000018
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
86863
86938
+
Thr
TGT
[ENA]
¡û
>W1710516518
FNCP01000057
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
1372
1297
-
Thr
TGT
[ENA]
¡û
>W1710586661
FQXJ01000021
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
63864
63789
-
Thr
TGT
[ENA]
¡û
>W1710593507
FRDN01000003
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
45485
45410
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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