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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455214 (127 seq.)
>W1711136427
LVAE01000032
Fibrobacterota
Fibrobacterales bacterium Fibro_02 [LVAE]
14823
14898
+
Lys
CTT
[ENA]
¡û
>W1711136431
LVAE01000042
Fibrobacterota
Fibrobacterales bacterium Fibro_02 [LVAE]
15965
15890
-
Lys
CTT
[ENA]
¡û
>W1711136447
LVAF01000008
Fibrobacterota
Fibrobacterales bacterium Fibro_03 [LVAF]
2152
2225
+
Lys
CTT
[ENA]
¡û
>W1711136461
LVAF01000045
Fibrobacterota
Fibrobacterales bacterium Fibro_03 [LVAF]
10075
10000
-
Lys
CTT
[ENA]
¡û
>W1711796012
MWQE01000001
Fibrobacterota
Fibrobacter sp. UWR2 [MWQE]
73390
73317
-
Lys
CTT
[ENA]
¡û
>W1711796036
MWQE01000011
Fibrobacterota
Fibrobacter sp. UWR2 [MWQE]
73729
73804
+
Lys
CTT
[ENA]
¡û
>W1711796042
MWQF01000001
Fibrobacterota
Fibrobacter sp. UWH3 [MWQF]
224665
224590
-
Lys
CTT
[ENA]
¡û
>W1711796043
MWQF01000001
Fibrobacterota
Fibrobacter sp. UWH3 [MWQF]
224410
224335
-
Lys
CTT
[ENA]
¡û
>W1711796044
MWQF01000001
Fibrobacterota
Fibrobacter sp. UWH3 [MWQF]
224238
224163
-
Lys
CTT
[ENA]
¡û
>W1711796101
MWQG01000007
Fibrobacterota
Fibrobacter sp. UWH1 [MWQG]
129879
129804
-
Lys
CTT
[ENA]
¡û
>W1711796102
MWQG01000007
Fibrobacterota
Fibrobacter sp. UWH1 [MWQG]
129707
129632
-
Lys
CTT
[ENA]
¡û
>W1711796159
MWQH01000006
Fibrobacterota
Fibrobacter sp. UWB5 [MWQH]
59879
59954
+
Lys
CTT
[ENA]
¡û
>W1711796162
MWQH01000006
Fibrobacterota
Fibrobacter sp. UWB5 [MWQH]
190424
190351
-
Lys
CTT
[ENA]
¡û
>W1711796178
MWQI01000001
Fibrobacterota
Fibrobacter sp. UWB4 [MWQI]
818938
819013
+
Lys
CTT
[ENA]
¡û
>W1711796179
MWQI01000001
Fibrobacterota
Fibrobacter sp. UWB4 [MWQI]
819157
819232
+
Lys
CTT
[ENA]
¡û
>W1711796180
MWQI01000001
Fibrobacterota
Fibrobacter sp. UWB4 [MWQI]
819376
819451
+
Lys
CTT
[ENA]
¡û
>W1711796227
MWQJ01000002
Fibrobacterota
Fibrobacter sp. UWB3 [MWQJ]
187681
187756
+
Lys
CTT
[ENA]
¡û
>W1711796228
MWQJ01000002
Fibrobacterota
Fibrobacter sp. UWB3 [MWQJ]
187906
187981
+
Lys
CTT
[ENA]
¡û
>W1711796229
MWQJ01000002
Fibrobacterota
Fibrobacter sp. UWB3 [MWQJ]
188131
188206
+
Lys
CTT
[ENA]
¡û
>W1711796269
MWQK01000001
Fibrobacterota
Fibrobacter sp. UWB2 [MWQK]
74747
74672
-
Lys
CTT
[ENA]
¡û
>W1711796270
MWQK01000001
Fibrobacterota
Fibrobacter sp. UWB2 [MWQK]
74523
74448
-
Lys
CTT
[ENA]
¡û
>W1711796271
MWQK01000001
Fibrobacterota
Fibrobacter sp. UWB2 [MWQK]
74299
74224
-
Lys
CTT
[ENA]
¡û
>W1711796323
MWQL01000005
Fibrobacterota
Fibrobacter sp. UWB1 [MWQL]
165196
165271
+
Lys
CTT
[ENA]
¡û
>W1711796331
MWQL01000009
Fibrobacterota
Fibrobacter sp. UWB1 [MWQL]
78472
78545
+
Lys
CTT
[ENA]
¡û
>WENV180001081
FLNW01004091
[FLNW] bioreactor metagenome; Moose rumen
310
237
-
Lys
CTT
[ENA]
¢þ
>WENV180003166
FLNZ01000039
[FLNZ] bioreactor metagenome; Moose rumen
19832
19759
-
Lys
CTT
[ENA]
¢þ
>WENV180003195
FLNZ01000448
[FLNZ] bioreactor metagenome; Moose rumen
357
284
-
Lys
CTT
[ENA]
¢þ
>WENV180665585
OCVV011190980
[OCVV] gut metagenome; gut
14
87
+
Lys
CTT
[ENA]
¢þ
>WENV180665586
OCVV011190980
[OCVV] gut metagenome; gut
14
87
+
Lys
CTT
[ENA]
¢þ
>WENV180668655
OCVV011265673
[OCVV] gut metagenome; gut
237
310
+
Lys
CTT
[ENA]
¢þ
>WENV180668656
OCVV011265673
[OCVV] gut metagenome; gut
237
310
+
Lys
CTT
[ENA]
¢þ
>WENV180669857
OCVV011288931
[OCVV] gut metagenome; gut
14
87
+
Lys
CTT
[ENA]
¢þ
>WENV180669858
OCVV011288931
[OCVV] gut metagenome; gut
14
87
+
Lys
CTT
[ENA]
¢þ
>WENV180674283
OCVV011349968
[OCVV] gut metagenome; gut
1724
1651
-
Lys
CTT
[ENA]
¢þ
>WENV180674284
OCVV011349968
[OCVV] gut metagenome; gut
1724
1651
-
Lys
CTT
[ENA]
¢þ
>WENV180674723
OCVV011353934
[OCVV] gut metagenome; gut
15828
15901
+
Lys
CTT
[ENA]
¢þ
>WENV180674724
OCVV011353934
[OCVV] gut metagenome; gut
15961
16034
+
Lys
CTT
[ENA]
¢þ
>WENV180674725
OCVV011353934
[OCVV] gut metagenome; gut
15828
15901
+
Lys
CTT
[ENA]
¢þ
>WENV180674726
OCVV011353934
[OCVV] gut metagenome; gut
15961
16034
+
Lys
CTT
[ENA]
¢þ
>WENV180681445
OCVV012770252
[OCVV] gut metagenome; gut
74
1
-
Lys
CTT
[ENA]
¢þ
>WENV180681446
OCVV012770252
[OCVV] gut metagenome; gut
74
1
-
Lys
CTT
[ENA]
¢þ
>WENV180681519
OCVV012777990
[OCVV] gut metagenome; gut
13
86
+
Lys
CTT
[ENA]
¢þ
>WENV180681520
OCVV012777990
[OCVV] gut metagenome; gut
13
86
+
Lys
CTT
[ENA]
¢þ
>WENV180684059
OCVV012852029
[OCVV] gut metagenome; gut
74
1
-
Lys
CTT
[ENA]
¢þ
>WENV180684060
OCVV012852029
[OCVV] gut metagenome; gut
74
1
-
Lys
CTT
[ENA]
¢þ
>WENV170778005
LXOW01346810
[LXOW] bovine gut metagenome; Cow rumen
177
102
-
Lys
CTT
[ENA]
¢þ
>W09134169
ACRA01000003
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [ACRA]
309288
309363
+
Lys
CTT
[ENA]
¡û
>W09134170
ACRA01000003
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [ACRA]
309491
309566
+
Lys
CTT
[ENA]
¡û
>W09134171
ACRA01000003
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [ACRA]
309715
309790
+
Lys
CTT
[ENA]
¡û
>W1911496501
OCMS01000001
Fibrobacterota
Fibrobacter sp. UWB16 [OCMS]
84294
84221
-
Lys
CTT
[ENA]
¡û
>W1911496502
OCMS01000001
Fibrobacterota
Fibrobacter sp. UWB16 [OCMS]
84069
83996
-
Lys
CTT
[ENA]
¡û
>W1911496503
OCMS01000001
Fibrobacterota
Fibrobacter sp. UWB16 [OCMS]
83844
83771
-
Lys
CTT
[ENA]
¡û
>W1911497825
OCSS01000001
Fibrobacterota
Fibrobacter sp. UWT3 [OCSS]
1442976
1443049
+
Lys
CTT
[ENA]
¡û
>W1911497837
OCSS01000001
Fibrobacterota
Fibrobacter sp. UWT3 [OCSS]
77565
77492
-
Lys
CTT
[ENA]
¡û
>W1810089745
PGEX01000001
Fibrobacterota
Hallerella succinigenes UWS3 [PGEX]
2811632
2811705
+
Lys
CTT
[ENA]
¡û
>W1810172631
PJMN01000001
Fibrobacterota
Fibrobacter sp. UWT1 [PJMN]
2313713
2313640
-
Lys
CTT
[ENA]
¡û
>W1810172632
PJMN01000001
Fibrobacterota
Fibrobacter sp. UWT1 [PJMN]
2313458
2313385
-
Lys
CTT
[ENA]
¡û
>W1810172633
PJMN01000001
Fibrobacterota
Fibrobacter sp. UWT1 [PJMN]
2313286
2313213
-
Lys
CTT
[ENA]
¡û
>W1810400615
PYGG01000006
Fibrobacterota
Fibrobacter sp. UWS2 [PYGG]
30519
30592
+
Lys
CTT
[ENA]
¡û
>W1810595053
QGDP01000001
Fibrobacterota
Fibrobacter succinogenes subsp. elongatus HM2 [QGDP]
912445
912518
+
Lys
CTT
[ENA]
¡û
>W1810595054
QGDP01000001
Fibrobacterota
Fibrobacter succinogenes subsp. elongatus HM2 [QGDP]
912669
912742
+
Lys
CTT
[ENA]
¡û
>W1810595055
QGDP01000001
Fibrobacterota
Fibrobacter succinogenes subsp. elongatus HM2 [QGDP]
912894
912967
+
Lys
CTT
[ENA]
¡û
>W1810595315
QGDU01000004
Fibrobacterota
Fibrobacter sp. UWR4 [QGDU]
54311
54384
+
Lys
CTT
[ENA]
¡û
>W1810595316
QGDU01000004
Fibrobacterota
Fibrobacter sp. UWR4 [QGDU]
54492
54565
+
Lys
CTT
[ENA]
¡û
>W1810595396
QGDW01000001
Fibrobacterota
Fibrobacter sp. UWB6 [QGDW]
841675
841748
+
Lys
CTT
[ENA]
¡û
>W1810595399
QGDW01000001
Fibrobacterota
Fibrobacter sp. UWB6 [QGDW]
897029
897102
+
Lys
CTT
[ENA]
¡û
>W1810685058
QKZA01000004
Fibrobacterota
Fibrobacter sp. UWR1 [QKZA]
54311
54384
+
Lys
CTT
[ENA]
¡û
>W1810685059
QKZA01000004
Fibrobacterota
Fibrobacter sp. UWR1 [QKZA]
54492
54565
+
Lys
CTT
[ENA]
¡û
>W1810695909
QLSW01000002
Fibrobacterota
Fibrobacter sp. UWH8 [QLSW]
116096
116169
+
Lys
CTT
[ENA]
¡û
>W1810695910
QLSW01000002
Fibrobacterota
Fibrobacter sp. UWH8 [QLSW]
116351
116424
+
Lys
CTT
[ENA]
¡û
>W1810695911
QLSW01000002
Fibrobacterota
Fibrobacter sp. UWH8 [QLSW]
116523
116596
+
Lys
CTT
[ENA]
¡û
>C10106895
CP001792
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP001792]
3825284
3825359
+
Lys
CTT
-
¡û
>C10106896
CP001792
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP001792]
3825487
3825562
+
Lys
CTT
-
¡û
>C10106897
CP001792
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP001792]
3825711
3825786
+
Lys
CTT
-
¡û
>C10106924
CP002158
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP002158]
429199
429274
+
Lys
CTT
-
¡û
>C10106925
CP002158
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP002158]
429402
429477
+
Lys
CTT
-
¡û
>C10106926
CP002158
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP002158]
429626
429701
+
Lys
CTT
-
¡û
>W1610636541
LIUK01000010
Fibrobacterota
Fibrobacteria bacterium AD80 [LIUK]
14823
14898
+
Lys
CTT
[ENA]
¡û
>W1610636548
LIUK01000023
Fibrobacterota
Fibrobacteria bacterium AD80 [LIUK]
15965
15890
-
Lys
CTT
[ENA]
¡û
>W1610636573
LIUL01000008
Fibrobacterota
Fibrobacteria bacterium AD111 [LIUL]
2152
2225
+
Lys
CTT
[ENA]
¡û
>W1610636587
LIUL01000045
Fibrobacterota
Fibrobacteria bacterium AD111 [LIUL]
10075
10000
-
Lys
CTT
[ENA]
¡û
>W1610947547
LVAE01000032
Fibrobacterota
Fibrobacterales bacterium Fibro_02 [LVAE]
14823
14898
+
Lys
CTT
[ENA]
¡û
>W1610947551
LVAE01000042
Fibrobacterota
Fibrobacterales bacterium Fibro_02 [LVAE]
15965
15890
-
Lys
CTT
[ENA]
¡û
>W1610947567
LVAF01000008
Fibrobacterota
Fibrobacterales bacterium Fibro_03 [LVAF]
2152
2225
+
Lys
CTT
[ENA]
¡û
>W1610947581
LVAF01000045
Fibrobacterota
Fibrobacterales bacterium Fibro_03 [LVAF]
10075
10000
-
Lys
CTT
[ENA]
¡û
>W1710584962
FQVZ01000001
Fibrobacterota
Fibrobacter sp. UWB8 [FQVZ]
801297
801372
+
Lys
CTT
[ENA]
¡û
>W1710584965
FQVZ01000001
Fibrobacterota
Fibrobacter sp. UWB8 [FQVZ]
856651
856724
+
Lys
CTT
[ENA]
¡û
>W1710585763
FQWP01000005
Fibrobacterota
Fibrobacter sp. UWH9 [FQWP]
104525
104600
+
Lys
CTT
[ENA]
¡û
>W1710585764
FQWP01000005
Fibrobacterota
Fibrobacter sp. UWH9 [FQWP]
104780
104855
+
Lys
CTT
[ENA]
¡û
>W1710585765
FQWP01000005
Fibrobacterota
Fibrobacter sp. UWH9 [FQWP]
104952
105027
+
Lys
CTT
[ENA]
¡û
>W1710585834
FQWR01000001
Fibrobacterota
Fibrobacter sp. UWCM [FQWR]
324078
324153
+
Lys
CTT
[ENA]
¡û
>W1710585841
FQWR01000003
Fibrobacterota
Fibrobacter sp. UWCM [FQWR]
105830
105905
+
Lys
CTT
[ENA]
¡û
>W1710587438
FQYM01000024
Fibrobacterota
Fibrobacter sp. UWP2 [FQYM]
15038
14963
-
Lys
CTT
[ENA]
¡û
>W1710590322
FRAX01000004
Fibrobacterota
Fibrobacter sp. UWH6 [FRAX]
19518
19593
+
Lys
CTT
[ENA]
¡û
>W1710590323
FRAX01000004
Fibrobacterota
Fibrobacter sp. UWH6 [FRAX]
19773
19848
+
Lys
CTT
[ENA]
¡û
>W1710590324
FRAX01000004
Fibrobacterota
Fibrobacter sp. UWH6 [FRAX]
19945
20020
+
Lys
CTT
[ENA]
¡û
>W1710590379
FRAY01000003
Fibrobacterota
Fibrobacter sp. UWH4 [FRAY]
307120
307195
+
Lys
CTT
[ENA]
¡û
>W1710590387
FRAY01000004
Fibrobacterota
Fibrobacter sp. UWH4 [FRAY]
66501
66428
-
Lys
CTT
[ENA]
¡û
>W1710590415
FRAZ01000004
Fibrobacterota
Fibrobacter sp. UWB12 [FRAZ]
77261
77336
+
Lys
CTT
[ENA]
¡û
>W1710590416
FRAZ01000004
Fibrobacterota
Fibrobacter sp. UWB12 [FRAZ]
77479
77554
+
Lys
CTT
[ENA]
¡û
>W1710590417
FRAZ01000004
Fibrobacterota
Fibrobacter sp. UWB12 [FRAZ]
77697
77772
+
Lys
CTT
[ENA]
¡û
>W1710590472
FRBA01000006
Fibrobacterota
Fibrobacter sp. UWOV1 [FRBA]
65777
65704
-
Lys
CTT
[ENA]
¡û
>W1710590477
FRBA01000008
Fibrobacterota
Fibrobacter sp. UWOV1 [FRBA]
135323
135398
+
Lys
CTT
[ENA]
¡û
>W1710590518
FRBB01000014
Fibrobacterota
Fibrobacter sp. UWH5 [FRBB]
20683
20758
+
Lys
CTT
[ENA]
¡û
>W1710590519
FRBB01000014
Fibrobacterota
Fibrobacter sp. UWH5 [FRBB]
20938
21013
+
Lys
CTT
[ENA]
¡û
>W1710590520
FRBB01000014
Fibrobacterota
Fibrobacter sp. UWH5 [FRBB]
21110
21185
+
Lys
CTT
[ENA]
¡û
>W1710590647
FRBE01000002
Fibrobacterota
Fibrobacter sp. UWEL [FRBE]
228931
228856
-
Lys
CTT
[ENA]
¡û
>W1710590648
FRBE01000002
Fibrobacterota
Fibrobacter sp. UWEL [FRBE]
228752
228677
-
Lys
CTT
[ENA]
¡û
>W1710590688
FRBF01000002
Fibrobacterota
Fibrobacter sp. UWT2 [FRBF]
147459
147534
+
Lys
CTT
[ENA]
¡û
>W1710590691
FRBF01000002
Fibrobacterota
Fibrobacter sp. UWT2 [FRBF]
212577
212652
+
Lys
CTT
[ENA]
¡û
>W1710592556
FRCO01000002
Fibrobacterota
Fibrobacter sp. UWB7 [FRCO]
35744
35669
-
Lys
CTT
[ENA]
¡û
>W1710592557
FRCO01000002
Fibrobacterota
Fibrobacter sp. UWB7 [FRCO]
35522
35447
-
Lys
CTT
[ENA]
¡û
>W1710592558
FRCO01000002
Fibrobacterota
Fibrobacter sp. UWB7 [FRCO]
35297
35222
-
Lys
CTT
[ENA]
¡û
>W1710592956
FRCW01000003
Fibrobacterota
Fibrobacter sp. UWR3 [FRCW]
237588
237663
+
Lys
CTT
[ENA]
¡û
>W1710592975
FRCW01000008
Fibrobacterota
Fibrobacter sp. UWR3 [FRCW]
174575
174650
+
Lys
CTT
[ENA]
¡û
>W1710595140
FSRT01000001
Fibrobacterota
Fibrobacter sp. UWB11 [FSRT]
1019779
1019704
-
Lys
CTT
[ENA]
¡û
>W1710595141
FSRT01000001
Fibrobacterota
Fibrobacter sp. UWB11 [FSRT]
1019561
1019486
-
Lys
CTT
[ENA]
¡û
>W1710595142
FSRT01000001
Fibrobacterota
Fibrobacter sp. UWB11 [FSRT]
1019343
1019268
-
Lys
CTT
[ENA]
¡û
>W1710608464
FXAX01000001
Fibrobacterota
Fibrobacter sp. UWB13 [FXAX]
975440
975515
+
Lys
CTT
[ENA]
¡û
>W1710608465
FXAX01000001
Fibrobacterota
Fibrobacter sp. UWB13 [FXAX]
975643
975718
+
Lys
CTT
[ENA]
¡û
>W1710608466
FXAX01000001
Fibrobacterota
Fibrobacter sp. UWB13 [FXAX]
975868
975943
+
Lys
CTT
[ENA]
¡û
>W1710608629
FXBA01000001
Fibrobacterota
Fibrobacter sp. UWB15 [FXBA]
841674
841749
+
Lys
CTT
[ENA]
¡û
>W1710608632
FXBA01000001
Fibrobacterota
Fibrobacter sp. UWB15 [FXBA]
897028
897101
+
Lys
CTT
[ENA]
¡û
>W1710771314
LIUK01000010
Fibrobacterota
Fibrobacteria bacterium AD80 [LIUK]
14823
14898
+
Lys
CTT
[ENA]
¡û
>W1710771321
LIUK01000023
Fibrobacterota
Fibrobacteria bacterium AD80 [LIUK]
15965
15890
-
Lys
CTT
[ENA]
¡û
>W1710771346
LIUL01000008
Fibrobacterota
Fibrobacteria bacterium AD111 [LIUL]
2152
2225
+
Lys
CTT
[ENA]
¡û
>W1710771360
LIUL01000045
Fibrobacterota
Fibrobacteria bacterium AD111 [LIUL]
10075
10000
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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