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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455716 (107 seq.)
>W1711078611
LSNA01000008
Bacillota
Oceanobacillus sp. E9 [LSNA]
466907
466832
-
Lys
TTT
[ENA]
¡û
>W1711078617
LSNA01000008
Bacillota
Oceanobacillus sp. E9 [LSNA]
18158
18083
-
Lys
TTT
[ENA]
¡û
>W1711234540
LYCS01000002
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
532440
532365
-
Lys
TTT
[ENA]
¡û
>W1711234552
LYCS01000003
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
352263
352188
-
Lys
TTT
[ENA]
¡û
>W1711234576
LYCS01000008
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
2538
2465
-
Lys
TTT
[ENA]
¡û
>W1711234618
LYCS01000014
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
73069
72997
-
Lys
TTT
[ENA]
¡û
>W1711525547
MLQR01000001
Bacillota
Anaerobacillus alkalilacustris [MLQR]
283120
283045
-
Lys
TTT
[ENA]
¡û
>W1711525577
MLQR01000006
Bacillota
Anaerobacillus alkalilacustris [MLQR]
2805
2880
+
Lys
TTT
[ENA]
¡û
>W1711525595
MLQR01000014
Bacillota
Anaerobacillus alkalilacustris [MLQR]
62320
62245
-
Lys
TTT
[ENA]
¡û
>W1711525641
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
1266759
1266834
+
Lys
TTT
[ENA]
¡û
>W1711525672
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
617835
617760
-
Lys
TTT
[ENA]
¡û
>W1711525682
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
498930
498855
-
Lys
TTT
[ENA]
¡û
>W131087693
AOCX01000004
Bacillota
Oceanobacillus kimchii X50 [AOCX]
48
123
+
Lys
TTT
[ENA]
¡û
>W131087699
AOCX01000007
Bacillota
Oceanobacillus kimchii X50 [AOCX]
388818
388893
+
Lys
TTT
[ENA]
¡û
>W131236840
AUMQ01000035
Bacillota
Peribacillus kribbensis DSM 17871 [AUMQ]
80606
80681
+
Lys
TTT
[ENA]
¡û
>W131251396
CAVL010000055
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
710
635
-
Lys
TTT
[ENA]
¡û
>W131251409
CAVL010000056
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
117712
117637
-
Lys
TTT
[ENA]
¡û
>W131251411
CAVL010000058
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
72072
71997
-
Lys
TTT
[ENA]
¡û
>C015394
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
96669
96744
+
Lys
TTT
[Ensembl]
¡û
>C015403
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
102650
102725
+
Lys
TTT
[Ensembl]
¡û
>C015419
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
245112
245187
+
Lys
TTT
[Ensembl]
¡û
>C015425
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
663036
663111
+
Lys
TTT
[Ensembl]
¡û
>W141259248
CBYO010000016
Bacillota
Paucisalibacillus sp. EB02 [CBYO]
632
708
+
Lys
TTT
[ENA]
¡û
>W141263743
CCDM010000001
Bacillota
Oceanobacillus jeddahense S5 [CCDM]
613
538
-
Lys
TTT
[ENA]
¡û
>W141263757
CCDM010000002
Bacillota
Oceanobacillus jeddahense S5 [CCDM]
39107
39179
+
Lys
TTT
[ENA]
¡û
>W141263789
CCDM010000005
Bacillota
Oceanobacillus jeddahense S5 [CCDM]
399654
399729
+
Lys
TTT
[ENA]
¡û
>WENV170658608
JTFP01160452
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
177
252
+
Lys
TTT
[ENA]
¢þ
>W1910371516
FUFO01000001
Bacillota
Oceanobacillus kimchii Marseille-P19319 [FUFO]
329
404
+
Lys
TTT
[ENA]
¡û
>W1910371559
FUFO01000013
Bacillota
Oceanobacillus kimchii Marseille-P19319 [FUFO]
463343
463271
-
Lys
TTT
[ENA]
¡û
>W1910371565
FUFO01000013
Bacillota
Oceanobacillus kimchii Marseille-P19319 [FUFO]
13659
13584
-
Lys
TTT
[ENA]
¡û
>W1910371618
FUFQ01000001
Bacillota
Oceanobacillus sojae SK-2 [FUFQ]
385
460
+
Lys
TTT
[ENA]
¡û
>W1910371659
FUFQ01000031
Bacillota
Oceanobacillus sojae SK-2 [FUFQ]
298182
298107
-
Lys
TTT
[ENA]
¡û
>W1910371675
FUFQ01000032
Bacillota
Oceanobacillus sojae SK-2 [FUFQ]
112276
112204
-
Lys
TTT
[ENA]
¡û
>W1910546734
FZMZ01000003
Bacillota
Virgibacillus ndiopensis Marseille-P3835 [FZMZ]
308285
308210
-
Lys
TTT
[ENA]
¡û
>W1910546740
FZMZ01000003
Bacillota
Virgibacillus ndiopensis Marseille-P3835 [FZMZ]
944
869
-
Lys
TTT
[ENA]
¡û
>W1911329639
NULG01000008
Bacillota
Bacillus sp. AFS041924 [NULG]
4263
4190
-
Lys
TTT
[ENA]
¡û
>W1911382405
NVOE01000050
Bacillota
Bacillus toyonensis AFS095380 [NVOE]
5
78
+
Lys
TTT
[ENA]
¡û
>W1911504275
OESV01000008
Bacillota
Bacillus sp. Marseille-P3661 [OESV]
123557
123632
+
Lys
TTT
[ENA]
¡û
>W1911533041
OIXC01000003
Bacillota
Lentibacillus sp. Marseille-P4043 [OIXC]
117836
117761
-
Lys
TTT
[ENA]
¡û
>W1911708096
QOUX01000021
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
147708
147633
-
Lys
TTT
[ENA]
¡û
>W1911708111
QOUX01000024
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
3440
3365
-
Lys
TTT
[ENA]
¡û
>W1911708122
QOUX01000030
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
1127
1202
+
Lys
TTT
[ENA]
¡û
>W1911708164
QOUX01000040
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
1006
1081
+
Lys
TTT
[ENA]
¡û
>W1911708204
QOUX01000052
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
333
408
+
Lys
TTT
[ENA]
¡û
>W1810679855
QKRG01000027
Bacillota
Bacilli bacterium VT-841 [QKRG]
29115
29040
-
Lys
TTT
[ENA]
¡û
>W1810679863
QKRG01000050
Bacillota
Bacilli bacterium VT-841 [QKRG]
18678
18751
+
Lys
TTT
[ENA]
¡û
>W1810679893
QKRG01000066
Bacillota
Bacilli bacterium VT-841 [QKRG]
6633
6708
+
Lys
TTT
[ENA]
¡û
>W1810679906
QKRG01000067
Bacillota
Bacilli bacterium VT-841 [QKRG]
748
820
+
Lys
TTT
[ENA]
¡û
>W1810679921
QKRG01000097
Bacillota
Bacilli bacterium VT-841 [QKRG]
973
898
-
Lys
TTT
[ENA]
¡û
>W1810679966
QKRH01000014
Bacillota
Bacilli bacterium VT-441 [QKRH]
1436
1361
-
Lys
TTT
[ENA]
¡û
>W1810679980
QKRH01000028
Bacillota
Bacilli bacterium VT-441 [QKRH]
29072
28997
-
Lys
TTT
[ENA]
¡û
>W1810679988
QKRH01000042
Bacillota
Bacilli bacterium VT-441 [QKRH]
23707
23780
+
Lys
TTT
[ENA]
¡û
>W1810680017
QKRH01000063
Bacillota
Bacilli bacterium VT-441 [QKRH]
748
820
+
Lys
TTT
[ENA]
¡û
>W1810680075
QKRI01000013
Bacillota
Bacilli bacterium VT-005 [QKRI]
72055
72130
+
Lys
TTT
[ENA]
¡û
>W1810680091
QKRI01000028
Bacillota
Bacilli bacterium VT-005 [QKRI]
29072
28997
-
Lys
TTT
[ENA]
¡û
>W1810680099
QKRI01000041
Bacillota
Bacilli bacterium VT-005 [QKRI]
23707
23780
+
Lys
TTT
[ENA]
¡û
>W1810680127
QKRI01000062
Bacillota
Bacilli bacterium VT-005 [QKRI]
748
820
+
Lys
TTT
[ENA]
¡û
>W1810680143
QKRI01000090
Bacillota
Bacilli bacterium VT-005 [QKRI]
825
750
-
Lys
TTT
[ENA]
¡û
>W1810745268
QOWG01000027
Bacillota
Bacilli bacterium VT-842 [QOWG]
29292
29217
-
Lys
TTT
[ENA]
¡û
>W1810745276
QOWG01000050
Bacillota
Bacilli bacterium VT-842 [QOWG]
1232
1159
-
Lys
TTT
[ENA]
¡û
>W1810745306
QOWG01000065
Bacillota
Bacilli bacterium VT-842 [QOWG]
1436
1361
-
Lys
TTT
[ENA]
¡û
>W1810745319
QOWG01000066
Bacillota
Bacilli bacterium VT-842 [QOWG]
748
820
+
Lys
TTT
[ENA]
¡û
>W1810745334
QOWG01000097
Bacillota
Bacilli bacterium VT-842 [QOWG]
973
898
-
Lys
TTT
[ENA]
¡û
>W1810745367
QOWH01000124
Bacillota
Bacilli bacterium VT-88 [QOWH]
1182
1109
-
Lys
TTT
[ENA]
¡û
>W1810745380
QOWH01000151
Bacillota
Bacilli bacterium VT-88 [QOWH]
629
704
+
Lys
TTT
[ENA]
¡û
>W1810745407
QOWH01000211
Bacillota
Bacilli bacterium VT-88 [QOWH]
714
789
+
Lys
TTT
[ENA]
¡û
>W1810745422
QOWH01000213
Bacillota
Bacilli bacterium VT-88 [QOWH]
860
785
-
Lys
TTT
[ENA]
¡û
>W1810745452
QOWH01000248
Bacillota
Bacilli bacterium VT-88 [QOWH]
698
770
+
Lys
TTT
[ENA]
¡û
>W1810745496
QOWI01000010
Bacillota
Bacilli bacterium VT-124 [QOWI]
1579
1504
-
Lys
TTT
[ENA]
¡û
>W1810745510
QOWI01000022
Bacillota
Bacilli bacterium VT-124 [QOWI]
14631
14706
+
Lys
TTT
[ENA]
¡û
>W1810745533
QOWI01000042
Bacillota
Bacilli bacterium VT-124 [QOWI]
23966
24039
+
Lys
TTT
[ENA]
¡û
>W1810745561
QOWI01000074
Bacillota
Bacilli bacterium VT-124 [QOWI]
849
921
+
Lys
TTT
[ENA]
¡û
>W1510071238
CDGG01000001
Bacillota
Oceanobacillus oncorhynchi Oc5 [CDGG]
1591227
1591302
+
Lys
TTT
[ENA]
¡û
>W1510071250
CDGG01000001
Bacillota
Oceanobacillus oncorhynchi Oc5 [CDGG]
2438183
2438258
+
Lys
TTT
[ENA]
¡û
>W1511586493
LAZH01000004
Bacillota
Bacilli bacterium VT-13-104 [LAZH]
1188
1115
-
Lys
TTT
[ENA]
¡û
>W1511586525
LAZH01000021
Bacillota
Bacilli bacterium VT-13-104 [LAZH]
30594
30519
-
Lys
TTT
[ENA]
¡û
>W1511586538
LAZH01000071
Bacillota
Bacilli bacterium VT-13-104 [LAZH]
513
588
+
Lys
TTT
[ENA]
¡û
>W11150981
AEWH01000059
Bacillota
Ornithinibacillus scapharcae TW25 [AEWH]
812
737
-
Lys
TTT
[ENA]
¡û
>W11151000
AEWH01000075
Bacillota
Ornithinibacillus scapharcae TW25 [AEWH]
18900
18824
-
Lys
TTT
[ENA]
¡û
>W1511640180
LDPV02000018
Bacillota
Ornithinibacillus contaminans DSM 22953 [LDPV]
108361
108286
-
Lys
TTT
[ENA]
¡û
>W1511640206
LDPV02000049
Bacillota
Ornithinibacillus contaminans DSM 22953 [LDPV]
64023
64098
+
Lys
TTT
[ENA]
¡û
>W1511640402
LDUE01000062
Bacillota
Ornithinibacillus californiensis DSM 16628 [LDUE]
471
546
+
Lys
TTT
[ENA]
¡û
>W1511640412
LDUE01000066
Bacillota
Ornithinibacillus californiensis DSM 16628 [LDUE]
2945
3020
+
Lys
TTT
[ENA]
¡û
>W1511640428
LDUE01000070
Bacillota
Ornithinibacillus californiensis DSM 16628 [LDUE]
59047
58971
-
Lys
TTT
[ENA]
¡û
>W1610042505
BAXT01000033
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
224
299
+
Lys
TTT
[ENA]
¡û
>W1610042512
BAXT01000041
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
196
268
+
Lys
TTT
[ENA]
¡û
>W1610042525
BAXT01000083
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
622
547
-
Lys
TTT
[ENA]
¡û
>C131000059
AP012050
Bacillota
Amphibacillus xylanus NBRC 15112 [AP012050]
99105
99180
+
Lys
TTT
[Ensembl]
¡û
>C131000080
AP012050
Bacillota
Amphibacillus xylanus NBRC 15112 [AP012050]
358284
358357
+
Lys
TTT
[Ensembl]
¡û
>W1610617353
LGTK01000024
Bacillota
Oceanobacillus caeni [LGTK]
2720
2647
-
Lys
TTT
[ENA]
¡û
>W1610617388
LGTK01000056
Bacillota
Oceanobacillus caeni [LGTK]
19676
19752
+
Lys
TTT
[ENA]
¡û
>W1610617401
LGTK01000065
Bacillota
Oceanobacillus caeni [LGTK]
5215
5140
-
Lys
TTT
[ENA]
¡û
>W1610617406
LGTK01000099
Bacillota
Oceanobacillus caeni [LGTK]
7065
6990
-
Lys
TTT
[ENA]
¡û
>W1610617435
LGTK01000167
Bacillota
Oceanobacillus caeni [LGTK]
382
457
+
Lys
TTT
[ENA]
¡û
>W1611014180
LYCS01000002
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
532440
532365
-
Lys
TTT
[ENA]
¡û
>W1611014192
LYCS01000003
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
352263
352188
-
Lys
TTT
[ENA]
¡û
>W1611014216
LYCS01000008
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
2538
2465
-
Lys
TTT
[ENA]
¡û
>W1611014258
LYCS01000014
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
73069
72997
-
Lys
TTT
[ENA]
¡û
>W1710039599
BAXT01000033
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
224
299
+
Lys
TTT
[ENA]
¡û
>W1710039606
BAXT01000041
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
196
268
+
Lys
TTT
[ENA]
¡û
>W1710039619
BAXT01000083
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
622
547
-
Lys
TTT
[ENA]
¡û
>W1710584815
FQVW01000003
Bacillota
Ornithinibacillus halophilus [FQVW]
99068
98993
-
Lys
TTT
[ENA]
¡û
>W1710742940
LGTK01000024
Bacillota
Oceanobacillus caeni [LGTK]
2720
2647
-
Lys
TTT
[ENA]
¡û
>W1710742975
LGTK01000056
Bacillota
Oceanobacillus caeni [LGTK]
19676
19752
+
Lys
TTT
[ENA]
¡û
>W1710742988
LGTK01000065
Bacillota
Oceanobacillus caeni [LGTK]
5215
5140
-
Lys
TTT
[ENA]
¡û
>W1710742993
LGTK01000099
Bacillota
Oceanobacillus caeni [LGTK]
7065
6990
-
Lys
TTT
[ENA]
¡û
>W1710743022
LGTK01000167
Bacillota
Oceanobacillus caeni [LGTK]
382
457
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK