This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455767 (14 seq.)
>W1711606593
MORL01000022
Bacteroidota
Arsenicibacter rosenii [MORL]
252
179
-
Gln
TTG
[ENA]
¡û
>W141242806
CAIT01000010
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
231074
231003
-
Gln
TTG
[ENA]
¡û
>W1911766818
QXED01000004
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
286283
286212
-
Gln
TTG
[ENA]
¡û
>W1810364366
PVTE01000005
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
178187
178116
-
Gln
TTG
[ENA]
¡û
>SRA1015461
SRR023846.69393
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
32
103
+
Gln
TTG
[SRA]
>SRA1016110
SRR023846.351363
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
32
103
+
Gln
TTG
[SRA]
>W2010459331
JAAFZH010000001
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
651879
651808
-
Gln
TTG
[ENA]
¡û
>W2010468902
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
534408
534337
-
Gln
TTG
[ENA]
¡û
>W2011324965
QXED01000004
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
286283
286212
-
Gln
TTG
[ENA]
¡û
>C201250733
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
856045
856116
+
Gln
TTG
-
¡û
>C231263203
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
5221490
5221561
+
Gln
TTG
-
¡û
>C241140680
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
8787641
8787712
+
Gln
TTG
-
¡û
>C241156307
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
5015295
5015366
+
Gln
TTG
-
¡û
>C241171858
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
973288
973217
-
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK