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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45600 (23 seq.)
>W1711069406
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
567971
567884
-
Leu
CAG
[ENA]
¡û
>C171115124
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
130645
130732
+
Leu
CAG
-
¡û
>W131046817
AMSR01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
158016
157929
-
Leu
CAG
[ENA]
¡û
>C027952
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1129504
1129417
-
Leu
CAG
[Ensembl]
¡û
>WENV180380058
OBOQ01001111
[OBOQ] marine metagenome; Fridge
1434
1347
-
Leu
CAG
[ENA]
¢þ
>WENV180595488
OCPD01048059
[OCPD] marine metagenome; Mesotrophic water
145
232
+
Leu
CAG
[ENA]
¢þ
>WENV170413445
CEUK01109520
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
169
256
+
Leu
CAG
[ENA]
¢þ
>WENV170959967
MKWU01011943
[MKWU] sponge metagenome;
1481
1568
+
Leu
CAG
[ENA]
¢þ
>C181088888
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1131862
1131775
-
Leu
CAG
-
¡û
>C181088939
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1131862
1131775
-
Leu
CAG
-
¡û
>C181089266
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1131861
1131774
-
Leu
CAG
-
¡û
>C191145613
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1129460
1129373
-
Leu
CAG
-
¡û
>C191145664
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1129460
1129373
-
Leu
CAG
-
¡û
>C191145715
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1129460
1129373
-
Leu
CAG
-
¡û
>W09133967
ACQU01000005
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
32996
33083
+
Leu
CAG
[ENA]
¡û
>W1910182422
BJMW01000009
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
73728
73641
-
Leu
CAG
[ENA]
¡û
>C141008785
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
245742
245829
+
Leu
CAG
[Ensembl]
¡û
>C151004584
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
245517
245604
+
Leu
CAG
[Ensembl]
¡û
>C151004635
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
245517
245604
+
Leu
CAG
[Ensembl]
¡û
>C10114568
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
241274
241361
+
Leu
CAG
[Ensembl]
¡û
>C121003129
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
239557
239644
+
Leu
CAG
[Ensembl]
¡û
>C121015242
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
238290
238377
+
Leu
CAG
[Ensembl]
¡û
>W1610909934
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
567971
567884
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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