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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456075 (112 seq.)
>WENV180116929
OARB01000081
[OARB] human gut metagenome; ENVO:feces
5069
4994
-
Lys
TTT
[ENA]
¢þ
>WENV180117918
OARM01001985
[OARM] human gut metagenome; ENVO:feces
98
173
+
Lys
TTT
[ENA]
¢þ
>WENV180229094
OBCH01000193
[OBCH] human gut metagenome; human gut
5392
5467
+
Lys
TTT
[ENA]
¢þ
>WENV180403202
OBRR01038436
[OBRR] human gut metagenome; ENVO:feces
80
5
-
Lys
TTT
[ENA]
¢þ
>WENV180565167
OCLF01048073
[OCLF] human gut metagenome; human gut
218
293
+
Lys
TTT
[ENA]
¢þ
>WENV180633013
OCQZ01046965
[OCQZ] human gut metagenome; human gut
329
254
-
Lys
TTT
[ENA]
¢þ
>WENV183640846
OQVL01012259
[OQVL] human gut metagenome; human gut
666
591
-
Lys
TTT
[ENA]
¢þ
>WENV183647326
OQVS01000321
[OQVS] human gut metagenome; human gut
18902
18977
+
Lys
TTT
[ENA]
¢þ
>WENV183652150
OQVU01019157
[OQVU] human gut metagenome; human gut
344
419
+
Lys
TTT
[ENA]
¢þ
>WENV183657840
OQWI01050067
[OQWI] human gut metagenome; human gut
320
245
-
Lys
TTT
[ENA]
¢þ
>C191177910
CP040464
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S12 [CP040464]
524167
524092
-
Lys
TTT
-
¡û
>W141555910
JHQP01000004
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis [JHQP]
844
769
-
Lys
TTT
[ENA]
¡û
>W1910927970
NIQE01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1499c [NIQE]
319985
320060
+
Lys
TTT
[ENA]
¡û
>W1910927973
NIQE01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1499c [NIQE]
320233
320308
+
Lys
TTT
[ENA]
¡û
>W1910928018
NIQF01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1501d [NIQF]
982
907
-
Lys
TTT
[ENA]
¡û
>W1910928021
NIQF01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1501d [NIQF]
734
659
-
Lys
TTT
[ENA]
¡û
>W1910928059
NIQG01000005
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1509d [NIQG]
1622
1547
-
Lys
TTT
[ENA]
¡û
>W1910928097
NIQH01000003
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1547c [NIQH]
195412
195487
+
Lys
TTT
[ENA]
¡û
>W1910928100
NIQH01000003
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1547c [NIQH]
195660
195735
+
Lys
TTT
[ENA]
¡û
>W1910928156
NIQI01000005
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1559c [NIQI]
984
909
-
Lys
TTT
[ENA]
¡û
>W1910928159
NIQI01000005
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1559c [NIQI]
734
659
-
Lys
TTT
[ENA]
¡û
>W1910928172
NIQJ01000001
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1563d [NIQJ]
144291
144216
-
Lys
TTT
[ENA]
¡û
>W1910928245
NIQK01000053
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1564d [NIQK]
175
250
+
Lys
TTT
[ENA]
¡û
>W1910928256
NIQL01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1592a [NIQL]
151532
151607
+
Lys
TTT
[ENA]
¡û
>W1910928259
NIQL01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1592a [NIQL]
151780
151855
+
Lys
TTT
[ENA]
¡û
>W1910928291
NIQM01000001
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1597b [NIQM]
645435
645510
+
Lys
TTT
[ENA]
¡û
>W1910928294
NIQM01000001
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1597b [NIQM]
645683
645758
+
Lys
TTT
[ENA]
¡û
>W1910928332
NIQN01000001
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1599c [NIQN]
678484
678559
+
Lys
TTT
[ENA]
¡û
>W1910928335
NIQN01000001
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1599c [NIQN]
678734
678809
+
Lys
TTT
[ENA]
¡û
>W1910928389
NIQO01000003
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1603d [NIQO]
230638
230713
+
Lys
TTT
[ENA]
¡û
>W1910928392
NIQO01000003
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1603d [NIQO]
230886
230961
+
Lys
TTT
[ENA]
¡û
>W1910928430
NIQP01000004
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1614a [NIQP]
194925
195000
+
Lys
TTT
[ENA]
¡û
>W1910928433
NIQP01000004
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1614a [NIQP]
195173
195248
+
Lys
TTT
[ENA]
¡û
>W1910928482
NIQQ01000006
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP26b [NIQQ]
110127
110202
+
Lys
TTT
[ENA]
¡û
>W1910928485
NIQQ01000006
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP26b [NIQQ]
110377
110452
+
Lys
TTT
[ENA]
¡û
>W1910928524
NIQR01000009
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP28 [NIQR]
973
898
-
Lys
TTT
[ENA]
¡û
>W1910928527
NIQR01000009
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP28 [NIQR]
723
648
-
Lys
TTT
[ENA]
¡û
>W1910928563
NIQS01000005
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP28b [NIQS]
973
898
-
Lys
TTT
[ENA]
¡û
>W1910928566
NIQS01000005
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP28b [NIQS]
723
648
-
Lys
TTT
[ENA]
¡û
>W1910928593
NIQT01000006
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP30b [NIQT]
1668
1593
-
Lys
TTT
[ENA]
¡û
>W1910928596
NIQT01000006
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis VP30b [NIQT]
1418
1343
-
Lys
TTT
[ENA]
¡û
>W1810698421
QMAE01000001
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii CHY5 [QMAE]
62945
63020
+
Lys
TTT
[ENA]
¡û
>W1810698424
QMAE01000001
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii CHY5 [QMAE]
63194
63269
+
Lys
TTT
[ENA]
¡û
>W1810698464
QMAF01000003
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9004 [QMAF]
41479
41554
+
Lys
TTT
[ENA]
¡û
>W1810698467
QMAF01000003
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9004 [QMAF]
41728
41803
+
Lys
TTT
[ENA]
¡û
>W1810698514
QMAG01000003
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9426 [QMAG]
62796
62871
+
Lys
TTT
[ENA]
¡û
>W1810698517
QMAG01000003
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9426 [QMAG]
63044
63119
+
Lys
TTT
[ENA]
¡û
>W1810698545
QMAH01000004
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9752 [QMAH]
62852
62927
+
Lys
TTT
[ENA]
¡û
>W1810698548
QMAH01000004
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9752 [QMAH]
63100
63175
+
Lys
TTT
[ENA]
¡û
>W1810698617
QMAI01000047
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9767 [QMAI]
124
199
+
Lys
TTT
[ENA]
¡û
>W1810698620
QMAI01000047
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM9767 [QMAI]
373
448
+
Lys
TTT
[ENA]
¡û
>W1810698643
QMAJ01000006
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM10071 [QMAJ]
63462
63537
+
Lys
TTT
[ENA]
¡û
>W1810698646
QMAJ01000006
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM10071 [QMAJ]
63710
63785
+
Lys
TTT
[ENA]
¡û
>W1810698702
QMAK01000045
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM10074 [QMAK]
6804
6729
-
Lys
TTT
[ENA]
¡û
>W1810698705
QMAK01000045
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM10074 [QMAK]
6555
6480
-
Lys
TTT
[ENA]
¡û
>W1810698718
QMAL01000006
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM10075 [QMAL]
736
661
-
Lys
TTT
[ENA]
¡û
>W1810698721
QMAL01000006
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM10075 [QMAL]
488
413
-
Lys
TTT
[ENA]
¡û
>W1810698757
QMAM01000004
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM14416 [QMAM]
76371
76446
+
Lys
TTT
[ENA]
¡û
>W1810698760
QMAM01000004
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM14416 [QMAM]
76620
76695
+
Lys
TTT
[ENA]
¡û
>C151042160
CP009043
Campylobacterota
Campylobacter iguaniorum 1485E [CP009043]
708289
708364
+
Lys
TTT
[Ensembl]
¡û
>C151042163
CP009043
Campylobacterota
Campylobacter iguaniorum 1485E [CP009043]
708553
708628
+
Lys
TTT
[Ensembl]
¡û
>C161030595
CP010995
Campylobacterota
Campylobacter iguaniorum 2463D [CP010995]
691535
691610
+
Lys
TTT
-
¡û
>C161030598
CP010995
Campylobacterota
Campylobacter iguaniorum 2463D [CP010995]
691797
691872
+
Lys
TTT
-
¡û
>C161089425
CP015575
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260 [CP015575]
496549
496474
-
Lys
TTT
[Ensembl]
¡û
>C161089428
CP015575
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260 [CP015575]
496301
496226
-
Lys
TTT
[Ensembl]
¡û
>C161089466
CP015576
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii CCUG 27631 [CP015576]
505829
505754
-
Lys
TTT
[Ensembl]
¡û
>C161089469
CP015576
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii CCUG 27631 [CP015576]
505581
505506
-
Lys
TTT
[Ensembl]
¡û
>C161089482
CP015577
Campylobacterota
Campylobacter iguaniorum RM11343 [CP015577]
611717
611792
+
Lys
TTT
-
¡û
>C161089485
CP015577
Campylobacterota
Campylobacter iguaniorum RM11343 [CP015577]
611981
612056
+
Lys
TTT
-
¡û
>W1610164155
FAUT01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUT]
693472
693547
+
Lys
TTT
[ENA]
¡û
>W1610164158
FAUT01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUT]
693722
693797
+
Lys
TTT
[ENA]
¡û
>W1610164212
FAUU01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUU]
971
896
-
Lys
TTT
[ENA]
¡û
>W1610164215
FAUU01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUU]
723
648
-
Lys
TTT
[ENA]
¡û
>W1610164237
FAUV01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUV]
693107
693182
+
Lys
TTT
[ENA]
¡û
>W1610164293
FAUW01000002
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUW]
978
903
-
Lys
TTT
[ENA]
¡û
>W1610164339
FAUX01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUX]
7989
7914
-
Lys
TTT
[ENA]
¡û
>W1610164380
FAUY01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUY]
256540
256615
+
Lys
TTT
[ENA]
¡û
>W1610164385
FAUY01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUY]
257604
257679
+
Lys
TTT
[ENA]
¡û
>W1610164388
FAUY01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUY]
257854
257929
+
Lys
TTT
[ENA]
¡û
>W1610164421
FAUZ01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUZ]
141519
141594
+
Lys
TTT
[ENA]
¡û
>W1610164447
FAVB01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVB]
588881
588956
+
Lys
TTT
[ENA]
¡û
>W1610164484
FAVC01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
750150
750225
+
Lys
TTT
[ENA]
¡û
>W1610164489
FAVC01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
751274
751349
+
Lys
TTT
[ENA]
¡û
>W1610164492
FAVC01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
751524
751599
+
Lys
TTT
[ENA]
¡û
>W1610164530
FAVD01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVD]
975
900
-
Lys
TTT
[ENA]
¡û
>W1610164533
FAVD01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVD]
727
652
-
Lys
TTT
[ENA]
¡û
>W1610164569
FAVE01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVE]
644862
644937
+
Lys
TTT
[ENA]
¡û
>W1610164629
FAVF01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVF]
384852
384927
+
Lys
TTT
[ENA]
¡û
>W1610164635
FAVF01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVF]
386174
386249
+
Lys
TTT
[ENA]
¡û
>W1610164655
FAVG01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVG]
966
891
-
Lys
TTT
[ENA]
¡û
>W1710165822
FAUT01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUT]
693472
693547
+
Lys
TTT
[ENA]
¡û
>W1710165825
FAUT01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUT]
693722
693797
+
Lys
TTT
[ENA]
¡û
>W1710165879
FAUU01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUU]
971
896
-
Lys
TTT
[ENA]
¡û
>W1710165882
FAUU01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUU]
723
648
-
Lys
TTT
[ENA]
¡û
>W1710165904
FAUV01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUV]
693107
693182
+
Lys
TTT
[ENA]
¡û
>W1710165960
FAUW01000002
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUW]
978
903
-
Lys
TTT
[ENA]
¡û
>W1710166006
FAUX01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUX]
7989
7914
-
Lys
TTT
[ENA]
¡û
>W1710166047
FAUY01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUY]
256540
256615
+
Lys
TTT
[ENA]
¡û
>W1710166052
FAUY01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUY]
257604
257679
+
Lys
TTT
[ENA]
¡û
>W1710166055
FAUY01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUY]
257854
257929
+
Lys
TTT
[ENA]
¡û
>W1710166088
FAUZ01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUZ]
141519
141594
+
Lys
TTT
[ENA]
¡û
>W1710166114
FAVB01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVB]
588881
588956
+
Lys
TTT
[ENA]
¡û
>W1710166151
FAVC01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
750150
750225
+
Lys
TTT
[ENA]
¡û
>W1710166156
FAVC01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
751274
751349
+
Lys
TTT
[ENA]
¡û
>W1710166159
FAVC01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
751524
751599
+
Lys
TTT
[ENA]
¡û
>W1710166197
FAVD01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVD]
975
900
-
Lys
TTT
[ENA]
¡û
>W1710166200
FAVD01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVD]
727
652
-
Lys
TTT
[ENA]
¡û
>W1710166236
FAVE01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVE]
644862
644937
+
Lys
TTT
[ENA]
¡û
>W1710166296
FAVF01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVF]
384852
384927
+
Lys
TTT
[ENA]
¡û
>W1710166302
FAVF01000003
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVF]
386174
386249
+
Lys
TTT
[ENA]
¡û
>W1710166322
FAVG01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVG]
966
891
-
Lys
TTT
[ENA]
¡û
>W1710577772
FPBB01000004
Campylobacterota
Campylobacter hyointestinalis [FPBB]
1762
1687
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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