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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456223 (130 seq.)
>W131052961
AMZQ01000007
Campylobacterota
Campylobacter showae CSUNSWCD [AMZQ]
29966
29893
-
Cys
GCA
[ENA]
¡û
>W131099309
AOTD01000014
Campylobacterota
Campylobacter showae CC57C [AOTD]
10096
10023
-
Cys
GCA
[ENA]
¡û
>W131161326
AQXN01000008
Campylobacterota
Campylobacter curvus DSM 6644 [AQXN]
136138
136065
-
Cys
GCA
[ENA]
¡û
>w017197
AARA02000001
Campylobacterota
Campylobacter curvus 525.92 [AARA]
1938659
1938589
-
Cys
GCA
[ENA]
¡û
>WENV180287295
OBIK01011511
[OBIK] hydrothermal vent metagenome; sea water
270
197
-
Cys
GCA
[ENA]
¡û
>WENV180420682
OBVO01023697
[OBVO] human gut metagenome; faeces
116
189
+
Cys
GCA
[ENA]
¡û
>WENV180444429
OBWZ01010007
[OBWZ] human gut metagenome; faeces
566
493
-
Cys
GCA
[ENA]
¡û
>W141053146
ANNJ01000005
Campylobacterota
Campylobacter concisus UNSW2 [ANNJ]
117481
117408
-
Cys
GCA
[ENA]
¡û
>WENV180709271
ODFJ01043945
[ODFJ] human metagenome; G_DNA_Tongue dorsum
141
214
+
Cys
GCA
[ENA]
¡û
>WENV180728429
ODGU01048780
[ODGU] human metagenome; G_DNA_Supragingival plaque
387
460
+
Cys
GCA
[ENA]
¡û
>WENV180731982
ODGW01053708
[ODGW] human metagenome; G_DNA_Supragingival plaque
173
246
+
Cys
GCA
[ENA]
¡û
>WENV180732461
ODGY01000621
[ODGY] human metagenome; G_DNA_Supragingival plaque
1469
1396
-
Cys
GCA
[ENA]
¡û
>WENV180739179
ODHD01011539
[ODHD] human metagenome; G_DNA_Supragingival plaque
343
270
-
Cys
GCA
[ENA]
¡û
>WENV180764751
ODIB01000790
[ODIB] human metagenome; G_DNA_Supragingival plaque
779
706
-
Cys
GCA
[ENA]
¡û
>WENV180769150
ODIG01037688
[ODIG] human metagenome; G_DNA_Tongue dorsum
191
264
+
Cys
GCA
[ENA]
¡û
>WENV180769526
ODIG01085497
[ODIG] human metagenome; G_DNA_Tongue dorsum
369
296
-
Cys
GCA
[ENA]
¡û
>WENV180796592
ODJB01007640
[ODJB] human metagenome; G_DNA_Supragingival plaque
163
236
+
Cys
GCA
[ENA]
¡û
>WENV180796951
ODJB01021562
[ODJB] human metagenome; G_DNA_Supragingival plaque
1243
1170
-
Cys
GCA
[ENA]
¡û
>WENV180797507
ODJB01068173
[ODJB] human metagenome; G_DNA_Supragingival plaque
177
250
+
Cys
GCA
[ENA]
¡û
>WENV180809869
ODJK01062484
[ODJK] human metagenome; G_DNA_Subgingival plaque
321
248
-
Cys
GCA
[ENA]
¡û
>WENV180813266
ODJO01000255
[ODJO] human metagenome; G_DNA_Supragingival plaque
417
490
+
Cys
GCA
[ENA]
¡û
>WENV180823350
ODJW01020491
[ODJW] human metagenome; G_DNA_Supragingival plaque
978
1051
+
Cys
GCA
[ENA]
¡û
>WENV180824817
ODJX01058442
[ODJX] human metagenome; G_DNA_Supragingival plaque
283
210
-
Cys
GCA
[ENA]
¡û
>WENV180832728
ODKC01003525
[ODKC] human metagenome; G_DNA_Supragingival plaque
6767
6840
+
Cys
GCA
[ENA]
¡û
>WENV180834495
ODKD01038092
[ODKD] human metagenome; G_DNA_Supragingival plaque
125
198
+
Cys
GCA
[ENA]
¡û
>WENV180842984
ODKN01000189
[ODKN] human metagenome; G_DNA_Supragingival plaque
20510
20583
+
Cys
GCA
[ENA]
¡û
>WENV180847790
ODKT01174583
[ODKT] human metagenome; G_DNA_Supragingival plaque
367
294
-
Cys
GCA
[ENA]
¡û
>WENV180859573
ODLD01001540
[ODLD] human metagenome; G_DNA_Supragingival plaque
11066
10993
-
Cys
GCA
[ENA]
¡û
>WENV180860342
ODLD01049835
[ODLD] human metagenome; G_DNA_Supragingival plaque
186
259
+
Cys
GCA
[ENA]
¡û
>WENV180881636
ODMA01016563
[ODMA] human metagenome; G_DNA_Supragingival plaque
166
239
+
Cys
GCA
[ENA]
¡û
>WENV180882750
ODMC01000465
[ODMC] human metagenome; G_DNA_Tongue dorsum
6292
6219
-
Cys
GCA
[ENA]
¡û
>WENV180889419
ODMN01040894
[ODMN] human metagenome; G_DNA_Supragingival plaque
418
345
-
Cys
GCA
[ENA]
¡û
>WENV180897825
ODNI01089102
[ODNI] human metagenome; G_DNA_Tongue dorsum
79
152
+
Cys
GCA
[ENA]
¡û
>WENV180924183
ODTK01001676
[ODTK] human metagenome; G_DNA_Supragingival plaque
1825
1898
+
Cys
GCA
[ENA]
¡û
>WENV180928372
ODTM01038436
[ODTM] human metagenome; G_DNA_Supragingival plaque
109
182
+
Cys
GCA
[ENA]
¡û
>WENV180930806
ODTP01000416
[ODTP] human metagenome; G_DNA_Tongue dorsum
27089
27162
+
Cys
GCA
[ENA]
¡û
>WENV180931757
ODTP01009625
[ODTP] human metagenome; G_DNA_Tongue dorsum
3308
3235
-
Cys
GCA
[ENA]
¡û
>WENV180937639
ODTX01000015
[ODTX] human metagenome; G_DNA_Supragingival plaque
132559
132632
+
Cys
GCA
[ENA]
¡û
>WENV180943969
ODUC01005320
[ODUC] human metagenome; G_DNA_Supragingival plaque
392
465
+
Cys
GCA
[ENA]
¡û
>WENV180948056
ODUG01000217
[ODUG] human metagenome; G_DNA_Tongue dorsum
44159
44232
+
Cys
GCA
[ENA]
¡û
>WENV180948139
ODUG01000327
[ODUG] human metagenome; G_DNA_Tongue dorsum
3713
3786
+
Cys
GCA
[ENA]
¡û
>WENV180951135
ODUH01009962
[ODUH] human metagenome; G_DNA_Subgingival plaque
155
228
+
Cys
GCA
[ENA]
¡û
>WENV180951344
ODUH01018345
[ODUH] human metagenome; G_DNA_Subgingival plaque
1570
1497
-
Cys
GCA
[ENA]
¡û
>WENV180955159
ODUJ01038413
[ODUJ] human metagenome; G_DNA_Tongue dorsum
393
320
-
Cys
GCA
[ENA]
¡û
>WENV180964786
ODUO01020984
[ODUO] human metagenome; G_DNA_Supragingival plaque
525
598
+
Cys
GCA
[ENA]
¡û
>WENV180973425
ODUW01005178
[ODUW] human metagenome; G_DNA_Supragingival plaque
110
183
+
Cys
GCA
[ENA]
¡û
>WENV180975720
ODUY01016542
[ODUY] human metagenome; G_DNA_Supragingival plaque
775
848
+
Cys
GCA
[ENA]
¡û
>WENV180979529
ODVC01000273
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
15420
15493
+
Cys
GCA
[ENA]
¡û
>WENV180980770
ODVE01001748
[ODVE] human metagenome; G_DNA_Supragingival plaque
5892
5965
+
Cys
GCA
[ENA]
¡û
>WENV180981627
ODVE01037992
[ODVE] human metagenome; G_DNA_Supragingival plaque
207
280
+
Cys
GCA
[ENA]
¡û
>WENV180983016
ODVF01002509
[ODVF] human metagenome; G_DNA_Supragingival plaque
7825
7752
-
Cys
GCA
[ENA]
¡û
>WENV180986217
ODVJ01063587
[ODVJ] human metagenome; G_DNA_Tongue dorsum
90
163
+
Cys
GCA
[ENA]
¡û
>WENV180987787
ODVK01134122
[ODVK] human metagenome; G_DNA_Supragingival plaque
81
8
-
Cys
GCA
[ENA]
¡û
>WENV180998872
ODVT01002689
[ODVT] human metagenome; G_DNA_Buccal mucosa
7427
7354
-
Cys
GCA
[ENA]
¡û
>WENV181002469
ODVX01000450
[ODVX] human metagenome; G_DNA_Supragingival plaque
25412
25339
-
Cys
GCA
[ENA]
¡û
>WENV181009358
ODWE01056815
[ODWE] human metagenome; G_DNA_Supragingival plaque
368
295
-
Cys
GCA
[ENA]
¡û
>WENV181019943
ODWU01027137
[ODWU] human metagenome; G_DNA_Supragingival plaque
349
276
-
Cys
GCA
[ENA]
¡û
>WENV181030175
ODXF01060088
[ODXF] human metagenome; G_DNA_Supragingival plaque
256
329
+
Cys
GCA
[ENA]
¡û
>WENV181037875
ODXQ01000060
[ODXQ] human metagenome; G_DNA_Tongue dorsum
55186
55259
+
Cys
GCA
[ENA]
¡û
>WENV181040617
ODXS01000334
[ODXS] human metagenome; G_DNA_Tongue dorsum
23798
23871
+
Cys
GCA
[ENA]
¡û
>WENV181042973
ODXU01022356
[ODXU] human metagenome; G_DNA_Buccal mucosa
397
324
-
Cys
GCA
[ENA]
¡û
>WENV181049844
ODYD01002618
[ODYD] human metagenome; G_DNA_Supragingival plaque
1797
1724
-
Cys
GCA
[ENA]
¡û
>WENV181050641
ODYD01036190
[ODYD] human metagenome; G_DNA_Supragingival plaque
990
1063
+
Cys
GCA
[ENA]
¡û
>WENV181057287
ODYL01000019
[ODYL] human metagenome; G_DNA_Tongue dorsum
99009
99082
+
Cys
GCA
[ENA]
¡û
>WENV181066642
ODZI01000652
[ODZI] human metagenome; G_DNA_Supragingival plaque
14083
14156
+
Cys
GCA
[ENA]
¡û
>WENV181067811
ODZI01058012
[ODZI] human metagenome; G_DNA_Supragingival plaque
393
466
+
Cys
GCA
[ENA]
¡û
>WENV181077109
OEAP01025887
[OEAP] human metagenome; G_DNA_Supragingival plaque
754
681
-
Cys
GCA
[ENA]
¡û
>WENV181077471
OEAP01062266
[OEAP] human metagenome; G_DNA_Supragingival plaque
369
296
-
Cys
GCA
[ENA]
¡û
>WENV181080647
OEAS01065690
[OEAS] human metagenome; G_DNA_Supragingival plaque
392
465
+
Cys
GCA
[ENA]
¡û
>WENV181081058
OEAS01120589
[OEAS] human metagenome; G_DNA_Supragingival plaque
332
259
-
Cys
GCA
[ENA]
¡û
>WENV181083813
OEAV01025393
[OEAV] human metagenome; G_DNA_Supragingival plaque
149
222
+
Cys
GCA
[ENA]
¡û
>WENV181090432
OEBC01000440
[OEBC] human metagenome; G_DNA_Supragingival plaque
207
280
+
Cys
GCA
[ENA]
¡û
>WENV181094182
OEBY01000011
[OEBY] human metagenome; G_DNA_Tongue dorsum
101234
101161
-
Cys
GCA
[ENA]
¡û
>WENV181098121
OECA01089825
[OECA] human metagenome; G_DNA_Tongue dorsum
155
82
-
Cys
GCA
[ENA]
¡û
>WENV181107712
OEEI01018019
[OEEI] human metagenome; G_DNA_Supragingival plaque
176
249
+
Cys
GCA
[ENA]
¡û
>WENV181113712
OEEL01072262
[OEEL] human metagenome; G_DNA_Tongue dorsum
265
192
-
Cys
GCA
[ENA]
¡û
>WENV181119857
OEFJ01000235
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
23257
23184
-
Cys
GCA
[ENA]
¡û
>WENV181121974
OEFL01040391
[OEFL] human metagenome; G_DNA_Supragingival plaque
169
242
+
Cys
GCA
[ENA]
¡û
>WENV181136509
OEGI01011819
[OEGI] human metagenome; G_DNA_Supragingival plaque
1426
1353
-
Cys
GCA
[ENA]
¡û
>WENV181137922
OEGJ01044251
[OEGJ] human metagenome; G_DNA_Supragingival plaque
394
467
+
Cys
GCA
[ENA]
¡û
>WENV181139353
OEGN01006789
[OEGN] human metagenome; G_DNA_Tongue dorsum
3983
4056
+
Cys
GCA
[ENA]
¡û
>WENV181144068
OEHM01070299
[OEHM] human metagenome; G_DNA_Supragingival plaque
312
239
-
Cys
GCA
[ENA]
¡û
>WENV181146413
OEHQ01005114
[OEHQ] human metagenome; G_DNA_Supragingival plaque
4082
4155
+
Cys
GCA
[ENA]
¡û
>WENV181151590
OEHW01080539
[OEHW] human metagenome; G_DNA_Tongue dorsum
307
234
-
Cys
GCA
[ENA]
¡û
>WENV181153245
OEIA01036032
[OEIA] human metagenome; G_DNA_Supragingival plaque
334
261
-
Cys
GCA
[ENA]
¡û
>WENV181160857
OEIK01047372
[OEIK] human metagenome; G_DNA_Supragingival plaque
323
250
-
Cys
GCA
[ENA]
¡û
>WENV181177947
OEJS01032326
[OEJS] human metagenome; G_DNA_Supragingival plaque
324
251
-
Cys
GCA
[ENA]
¡û
>WENV181179619
OEJT01009810
[OEJT] human metagenome; G_DNA_Supragingival plaque
2085
2012
-
Cys
GCA
[ENA]
¡û
>WENV181181414
OEJU01037067
[OEJU] human metagenome; G_DNA_Supragingival plaque
422
495
+
Cys
GCA
[ENA]
¡û
>WENV181182366
OEJV01007062
[OEJV] human metagenome; G_DNA_Supragingival plaque
1971
1898
-
Cys
GCA
[ENA]
¡û
>C08003137
CP000767
Campylobacterota
Campylobacter curvus 525.92 [CP000767]
1937804
1937734
-
Cys
GCA
[Ensembl]
¡û
>WENV182960749
OKWK01000002
[OKWK] human gut metagenome; stool
148878
148805
-
Cys
GCA
[ENA]
¡û
>WENV183511077
OMHV01005981
[OMHV] human oral metagenome; human oral
384
457
+
Cys
GCA
[ENA]
¡û
>WENV170635316
JDSF01001763
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
1300
1373
+
Cys
GCA
[ENA]
¡û
>WENV170692938
LGOV01049428
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
10650
10577
-
Cys
GCA
[ENA]
¡û
>WENV170699722
LGVF01636666
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
58
131
+
Cys
GCA
[ENA]
¡û
>W141451863
JFBL01000005
Campylobacterota
Sulfurospirillum arcachonense DSM 9755 [JFBL]
65379
65306
-
Cys
GCA
[ENA]
¡û
>C191220120
LR535679
Campylobacterota
Campylobacter showae [LR535679]
1204299
1204226
-
Cys
GCA
-
¡û
>W09121999
ACFU01000001
Campylobacterota
Campylobacter rectus RM3267 [ACFU]
106782
106709
-
Cys
GCA
[ENA]
¡û
>W09135488
ACVQ01000033
Campylobacterota
Campylobacter showae RM3277 [ACVQ]
101202
101275
+
Cys
GCA
[ENA]
¡û
>W1910756098
MLAN01000003
Campylobacterota
Helicobacter sp. 11S02629-2 [MLAN]
75093
75020
-
Cys
GCA
[ENA]
¡û
>W1910756235
MLAR01000004
Campylobacterota
Helicobacter sp. 13S00401-1 [MLAR]
29591
29664
+
Cys
GCA
[ENA]
¡û
>C151092559
CP012196
Campylobacterota
Campylobacter gracilis ATCC 33236 [CP012196]
2184748
2184675
-
Cys
GCA
-
¡û
>W2010775005
LIWU01000005
Campylobacterota
Campylobacter curvus ATCC 35224 [LIWU]
22910
22983
+
Cys
GCA
[ENA]
¡û
>W2010775039
LIWV01000004
Campylobacterota
Campylobacter curvus 370.96 [LIWV]
107385
107312
-
Cys
GCA
[ENA]
¡û
>W2010775077
LIWW01000003
Campylobacterota
Campylobacter curvus SS167074 [LIWW]
82779
82852
+
Cys
GCA
[ENA]
¡û
>W2010775194
LIWZ01000004
Campylobacterota
Campylobacter curvus SS174371 [LIWZ]
82084
82011
-
Cys
GCA
[ENA]
¡û
>W2010775235
LIXA01000011
Campylobacterota
Campylobacter curvus 17503 [LIXA]
25468
25541
+
Cys
GCA
[ENA]
¡û
>W2010775251
LIXB01000003
Campylobacterota
Campylobacter curvus 13570 [LIXB]
106831
106904
+
Cys
GCA
[ENA]
¡û
>W2010775291
LIXC01000004
Campylobacterota
Campylobacter curvus 13153 [LIXC]
111649
111576
-
Cys
GCA
[ENA]
¡û
>W2010884965
MLAN01000003
Campylobacterota
Helicobacter sp. 11S02629-2 [MLAN]
75093
75020
-
Cys
GCA
[ENA]
¡û
>W2010885102
MLAR01000004
Campylobacterota
Helicobacter sp. 13S00401-1 [MLAR]
29591
29664
+
Cys
GCA
[ENA]
¡û
>W2011483843
RQYP01000027
Campylobacterota
Campylobacter rectus OH2158 [RQYP]
17356
17429
+
Cys
GCA
[ENA]
¡û
>W2011817322
UFUN01000001
Campylobacterota
Campylobacter gracilis NCTC12738 [UFUN]
589215
589288
+
Cys
GCA
[ENA]
¡û
>W2011950577
UWOI01000001
Campylobacterota
Campylobacter showae [UWOI]
561831
561758
-
Cys
GCA
[ENA]
¡û
>W2011950600
UWOJ01000001
Campylobacterota
Campylobacter showae [UWOJ]
153338
153411
+
Cys
GCA
[ENA]
¡û
>W2011950677
UWOK01000001
Campylobacterota
Campylobacter showae [UWOK]
350144
350071
-
Cys
GCA
[ENA]
¡û
>W2011950714
UWOL01000001
Campylobacterota
Campylobacter showae [UWOL]
2020387
2020314
-
Cys
GCA
[ENA]
¡û
>W2011950751
UWOM01000001
Campylobacterota
Campylobacter showae [UWOM]
958953
958880
-
Cys
GCA
[ENA]
¡û
>W2011950781
UWON01000001
Campylobacterota
Campylobacter showae [UWON]
837503
837576
+
Cys
GCA
[ENA]
¡û
>W2011950823
UWOO01000001
Campylobacterota
Campylobacter showae [UWOO]
1130349
1130422
+
Cys
GCA
[ENA]
¡û
>W2012198340
VWSJ01000010
Campylobacterota
Campylobacter sp. FMV-PI01 [VWSJ]
21057
21130
+
Cys
GCA
[ENA]
¡û
>W2110399695
JADZGJ010000002
Campylobacterota
Campylobacter curvus 2017609248 [JADZGJ]
144200
144127
-
Cys
GCA
[ENA]
¡û
>W10106130
ACYG01000030
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
28156
28083
-
Cys
GCA
[ENA]
¡û
>C231219160
CP085962
Campylobacterota
Campylobacter rectus FDAARGOS_1549 [CP085962]
1110584
1110657
+
Cys
GCA
-
¡û
>C231219198
CP085963
Campylobacterota
Campylobacter gracilis FDAARGOS_1548 [CP085963]
921051
921124
+
Cys
GCA
-
¡û
>C231219264
CP085964
Campylobacterota
Campylobacter curvus FDAARGOS_1547 [CP085964]
541213
541140
-
Cys
GCA
-
¡û
>C241016680
CP012544
Campylobacterota
Campylobacter showae ATCC 51146 [CP012544]
40397
40470
+
Cys
GCA
-
¡û
>C241161206
CP053826
Campylobacterota
Campylobacter curvus ATCC 35224 [CP053826]
1896076
1896003
-
Cys
GCA
-
¡û
>W11108453
ACYG01000030
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
28156
28083
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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