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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456510 (7 seq.)
>WENV180729063
ODGU01174671
[ODGU] human metagenome; G_DNA_Supragingival plaque
325
249
-
Ile
GAT
[ENA]
¡û
>WENV180765378
ODIB01125637
[ODIB] human metagenome; G_DNA_Supragingival plaque
217
141
-
Ile
GAT
[ENA]
¡û
>WENV180951420
ODUH01022765
[ODUH] human metagenome; G_DNA_Subgingival plaque
79
155
+
Ile
GAT
[ENA]
¡û
>WENV180981078
ODVE01006478
[ODVE] human metagenome; G_DNA_Supragingival plaque
3036
2960
-
Ile
GAT
[ENA]
¡û
>WENV183713281
PDWI01132342
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
40
116
+
Ile
GAT
[ENA]
¡û
>WENV183713513
PDWI01141261
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1573
1497
-
Ile
GAT
[ENA]
¡û
>WENV183715716
PDWI01258239
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16
92
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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