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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456860 (24 seq.)
>W1710889319
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
811671
811744
+
Gly
TCC
[ENA]
¡û
>W1711377557
MDZA01000222
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
53807
53880
+
Gly
TCC
[ENA]
¡û
>W131215959
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
460648
460721
+
Gly
TCC
[ENA]
¡û
>W1711767883
MVBC01000009
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
215162
215089
-
Gly
TCC
[ENA]
¡û
>WENV180035855
FTLB01026025
[FTLB] metagenome; soil
158
231
+
Gly
TCC
[ENA]
¢þ
>WENV183705510
PDWI01001693
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8412
8485
+
Gly
TCC
[ENA]
¢þ
>WENV183705888
PDWI01002521
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13162
13089
-
Gly
TCC
[ENA]
¢þ
>WENV183717561
PDWJ01001125
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8412
8485
+
Gly
TCC
[ENA]
¢þ
>WENV170641791
JFJP01037605
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10920
10995
+
Gly
TCC
[ENA]
¢þ
>WENV170998642
MWWJ01067556
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
26
99
+
Gly
TCC
[ENA]
¢þ
>C181175108
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2893488
2893415
-
Gly
TCC
-
¡û
>C191087865
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
3741527
3741600
+
Gly
TCC
-
¡û
>W1910547388
FZNS01000002
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
669328
669255
-
Gly
TCC
[ENA]
¡û
>W1810089892
PGFA01000002
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
311957
312030
+
Gly
TCC
[ENA]
¡û
>W1810625894
QHKM01000003
Bacteroidota
Hymenobacter edaphi NL [QHKM]
160681
160754
+
Gly
TCC
[ENA]
¡û
>W1810678951
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
864966
865039
+
Gly
TCC
[ENA]
¡û
>C151064000
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3640765
3640692
-
Gly
TCC
[Ensembl]
¡û
>C151096193
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
198662
198735
+
Gly
TCC
-
¡û
>W1511543314
JZIR01000059
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
42719
42794
+
Gly
TCC
[ENA]
¡û
>W1511582951
LATM01000012
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
20525
20450
-
Gly
TCC
[ENA]
¡û
>C161070734
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4150570
4150497
-
Gly
TCC
[Ensembl]
¡û
>W1610749697
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
811671
811744
+
Gly
TCC
[ENA]
¡û
>W1710590097
FRAS01000002
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
90182
90255
+
Gly
TCC
[ENA]
¡û
>W1710610176
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
669057
668984
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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