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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456864 (31 seq.)
>W131180735
ARNJ01000014
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
5761
5836
+
Met
CAT
[ENA]
¡û
>W131215993
ATVL01000011
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
328778
328853
+
Met
CAT
[ENA]
¡û
>W1711377610
MDZB01000131
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
23404
23329
-
Met
CAT
[ENA]
¡û
>W1711377641
MDZC01000057
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
175614
175689
+
Met
CAT
[ENA]
¡û
>W1711726857
MTSE01000001
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
504846
504771
-
Met
CAT
[ENA]
¡û
>W1711767901
MVBC01000025
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
18640
18715
+
Met
CAT
[ENA]
¡û
>W1712105572
NIRR01000008
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
71642
71567
-
Met
CAT
[ENA]
¡û
>WENV170642768
JFJP01044500
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6798
6873
+
Met
CAT
[ENA]
¢þ
>WENV170988308
MWVX01452465
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
293
368
+
Met
CAT
[ENA]
¢þ
>W141734705
JNLX01000072
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
56942
57017
+
Met
CAT
[ENA]
¡û
>W1910547393
FZNS01000003
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
265108
265182
+
Met
CAT
[ENA]
¡û
>W1910651884
LYMU01000012
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
74432
74505
+
Met
CAT
[ENA]
¡û
>W1911788145
QYCN01000005
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
17722
17648
-
Met
CAT
[ENA]
¡û
>SRA1002895
SRR002326.83214
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
151
226
+
Met
CAT
[SRA]
>W1810625918
QHKM01000010
Bacteroidota
Hymenobacter edaphi NL [QHKM]
294
368
+
Met
CAT
[ENA]
¡û
>W1810678960
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
265006
264932
-
Met
CAT
[ENA]
¡û
>W1810912386
QVLT01000018
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
5344
5418
+
Met
CAT
[ENA]
¡û
>SRA1015539
SRR023846.103355
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
202
127
-
Met
CAT
[SRA]
>C151009409
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2118146
2118221
+
Met
CAT
[Ensembl]
¡û
>C151017364
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4633327
4633402
+
Met
CAT
[Ensembl]
¡û
>C151064018
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
253032
252957
-
Met
CAT
[Ensembl]
¡û
>C151096211
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
3474266
3474341
+
Met
CAT
-
¡û
>W1511543308
JZIR01000026
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
11124
11049
-
Met
CAT
[ENA]
¡û
>W1511582956
LATM01000014
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
126816
126741
-
Met
CAT
[ENA]
¡û
>C161061574
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
739874
739799
-
Met
CAT
[Ensembl]
¡û
>C161077123
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
3295276
3295201
-
Met
CAT
[Ensembl]
¡û
>W1710530563
FNOV01000007
Bacteroidota
Hymenobacter psychrophilus [FNOV]
12892
12967
+
Met
CAT
[ENA]
¡û
>W1710553551
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
5812
5887
+
Met
CAT
[ENA]
¡û
>W1710573731
FOXS01000002
Bacteroidota
Hymenobacter arizonensis [FOXS]
930380
930455
+
Met
CAT
[ENA]
¡û
>W1710590119
FRAS01000018
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
71217
71292
+
Met
CAT
[ENA]
¡û
>W1710610172
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
1238077
1238002
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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