This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456881 (56 seq.)
>W1711509616
MKZT01000005
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [MKZT]
188686
188761
+
Ala
GGC
[ENA]
¡û
>W1711750478
MUMZ01000104
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
59958
60033
+
Ala
GGC
[ENA]
¡û
>C171092332
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
3137022
3136947
-
Ala
GGC
-
¡û
>C171117489
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2780698
2780773
+
Ala
GGC
-
¡û
>C171118027
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
455931
455856
-
Ala
GGC
-
¡û
>W131180785
ARNK01000035
Gammaproteobacteria
Kushneria aurantia DSM 21353 [ARNK]
19067
18992
-
Ala
GGC
[ENA]
¡û
>W131180822
ARNK01000066
Gammaproteobacteria
Kushneria aurantia DSM 21353 [ARNK]
130257
130332
+
Ala
GGC
[ENA]
¡û
>W131196516
ASTJ01000024
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
198510
198435
-
Ala
GGC
[ENA]
¡û
>W131220986
AUAB01000002
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
262004
262079
+
Ala
GGC
[ENA]
¡û
>W141093336
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
914879
914954
+
Ala
GGC
[ENA]
¡û
>W141152729
AXCA01000101
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
40395
40470
+
Ala
GGC
[ENA]
¡û
>WENV170015935
AZIJ01004679
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
301
226
-
Ala
GGC
[ENA]
¢þ
>WENV170176947
CEOS01141254
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2950
3025
+
Ala
GGC
[ENA]
¢þ
>WENV170294038
CESC01031352
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
372
447
+
Ala
GGC
[ENA]
¢þ
>WENV170337634
CETA01141711
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
261
336
+
Ala
GGC
[ENA]
¢þ
>WENV170372584
CETS01113264
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
461
536
+
Ala
GGC
[ENA]
¢þ
>WENV170702044
LKMJ01000373
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5088
5013
-
Ala
GGC
[ENA]
¢þ
>WENV170965465
MTEU01002934
[MTEU] soil metagenome; naturally attenuated soil
62453
62528
+
Ala
GGC
[ENA]
¢þ
>WENV170965686
MTEV01000129
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
62372
62447
+
Ala
GGC
[ENA]
¢þ
>WENV170966105
MTEX01001593
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
62372
62447
+
Ala
GGC
[ENA]
¢þ
>C181052487
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
2650746
2650671
-
Ala
GGC
-
¡û
>C181084561
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
3045431
3045506
+
Ala
GGC
-
¡û
>W141727036
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
2512624
2512549
-
Ala
GGC
[ENA]
¡û
>W141754497
JNVT01000038
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
24852
24927
+
Ala
GGC
[ENA]
¡û
>W1910339611
FTLE01000005
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
198462
198387
-
Ala
GGC
[ENA]
¡û
>W1911539873
ONZI01000002
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
229056
228981
-
Ala
GGC
[ENA]
¡û
>W1810177422
PJRN01000003
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
236270
236195
-
Ala
GGC
[ENA]
¡û
>W1810200076
PNRG01000033
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
748381
748456
+
Ala
GGC
[ENA]
¡û
>W1810248947
PQBW01001650
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
141
216
+
Ala
GGC
[ENA]
¡û
>W1810364739
PVTM01000004
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
163328
163403
+
Ala
GGC
[ENA]
¡û
>W1810385398
PXNS01000010
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
48586
48661
+
Ala
GGC
[ENA]
¡û
>W1810385456
PXNT01000016
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
68461
68386
-
Ala
GGC
[ENA]
¡û
>W1810400726
PYGI01000013
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
122088
122163
+
Ala
GGC
[ENA]
¡û
>W1810425984
PYVV01000008
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
36203
36278
+
Ala
GGC
[ENA]
¡û
>W1810426086
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
765748
765673
-
Ala
GGC
[ENA]
¡û
>W1810444039
PZJK01000005
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
71739
71814
+
Ala
GGC
[ENA]
¡û
>W1810444280
PZJO01000002
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
829443
829368
-
Ala
GGC
[ENA]
¡û
>W1810444380
PZJP01000017
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
312068
311993
-
Ala
GGC
[ENA]
¡û
>W1810444717
PZJV01000001
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
986431
986356
-
Ala
GGC
[ENA]
¡û
>W1810624113
QHGY01000001
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
1115916
1115841
-
Ala
GGC
[ENA]
¡û
>W1810760650
QPKI01000005
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
48602
48527
-
Ala
GGC
[ENA]
¡û
>W1810786968
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
542681
542756
+
Ala
GGC
[ENA]
¡û
>W1510071599
CDGR01000120
Gammaproteobacteria
Halomonas salina B6 [CDGR]
3688
3763
+
Ala
GGC
[ENA]
¡û
>W1511319673
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
947006
946931
-
Ala
GGC
[ENA]
¡û
>W1511518466
JXYB01000044
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
137086
137011
-
Ala
GGC
[ENA]
¡û
>C161051014
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
1257010
1257085
+
Ala
GGC
-
¡û
>W121123940
BAEU01000098
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
1992
2067
+
Ala
GGC
[ENA]
¡û
>W1710519393
FNES01000001
Gammaproteobacteria
Halomonas gudaonensis [FNES]
72985
73060
+
Ala
GGC
[ENA]
¡û
>W1710524551
FNIV01000001
Gammaproteobacteria
Halomonas shengliensis [FNIV]
571546
571621
+
Ala
GGC
[ENA]
¡û
>W1710533738
FNRJ01000002
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
277741
277666
-
Ala
GGC
[ENA]
¡û
>W1710539167
FNVC01000017
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
62318
62393
+
Ala
GGC
[ENA]
¡û
>W1710544883
FOBC01000017
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
88182
88257
+
Ala
GGC
[ENA]
¡û
>W1710558481
FOLY01000001
Gammaproteobacteria
Kushneria avicenniae [FOLY]
595582
595507
-
Ala
GGC
[ENA]
¡û
>W1710577177
FPAQ01000007
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
5543
5618
+
Ala
GGC
[ENA]
¡û
>W1710591881
FRCA01000017
Gammaproteobacteria
Halomonas cupida [FRCA]
47705
47630
-
Ala
GGC
[ENA]
¡û
>W1710596373
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
240990
240915
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK