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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457182 (92 seq.)
>W1710786975
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2347632
2347559
-
Asn
GTT
[ENA]
¡û
>W1710860314
LMCT01000067
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
239799
239872
+
Asn
GTT
[ENA]
¡û
>W1710866989
LMHX01000045
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
239751
239824
+
Asn
GTT
[ENA]
¡û
>W1711183442
LWLA01000045
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
174203
174128
-
Asn
GTT
[ENA]
¡û
>W1711627044
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
5006599
5006672
+
Asn
GTT
[ENA]
¡û
>C171109503
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
4035797
4035870
+
Asn
GTT
-
¡û
>WENV180016666
FSVS01000450
[FSVS] metagenome; soil
1622
1549
-
Asn
GTT
[ENA]
¢þ
>WENV180028890
FTJH01293335
[FTJH] metagenome; soil
213
140
-
Asn
GTT
[ENA]
¢þ
>WENV180033227
FTKF01092161
[FTKF] metagenome; soil
641
714
+
Asn
GTT
[ENA]
¢þ
>WENV180033245
FTKF01127457
[FTKF] metagenome; soil
978
905
-
Asn
GTT
[ENA]
¢þ
>WENV180033809
FTKL01315873
[FTKL] metagenome; soil
2
75
+
Asn
GTT
[ENA]
¢þ
>WENV180034963
FTKS01186203
[FTKS] metagenome; soil
277
204
-
Asn
GTT
[ENA]
¢þ
>WENV180343098
OBLJ01289493
[OBLJ] soil metagenome; Clay
93
166
+
Asn
GTT
[ENA]
¢þ
>W141282711
JAIY01000007
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
266421
266496
+
Asn
GTT
[ENA]
¡û
>W141282804
JAIZ01000817
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
165
240
+
Asn
GTT
[ENA]
¡û
>W141282805
JAIZ01000817
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
273
346
+
Asn
GTT
[ENA]
¡û
>C181116276
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
2644792
2644865
+
Asn
GTT
-
¡û
>C181116277
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
2644905
2644978
+
Asn
GTT
-
¡û
>C181153054
CP027433
Actinomycetota
Gordonia iterans Co17 [CP027433]
2932044
2932117
+
Asn
GTT
-
¡û
>W141726607
JNBY01000081
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
44947
44874
-
Asn
GTT
[ENA]
¡û
>W141755533
JNWQ01000020
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
46901
46828
-
Asn
GTT
[ENA]
¡û
>W141755621
JNWR01000012
Actinomycetota
Kitasatospora aureofaciens [JNWR]
62511
62438
-
Asn
GTT
[ENA]
¡û
>W141756086
JNWY01000048
Actinomycetota
Kitasatospora setae [JNWY]
49731
49658
-
Asn
GTT
[ENA]
¡û
>W141756148
JNWZ01000023
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
2631
2558
-
Asn
GTT
[ENA]
¡û
>W141757006
JNXO01000605
Actinomycetota
Kitasatospora misakiensis [JNXO]
447
372
-
Asn
GTT
[ENA]
¡û
>W141757801
JNYE01000001
Actinomycetota
Kitasatospora phosalacinea [JNYE]
66056
65983
-
Asn
GTT
[ENA]
¡û
>W141759692
JNZN01001639
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
3156
3083
-
Asn
GTT
[ENA]
¡û
>W141760845
JOAI01000008
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
145678
145605
-
Asn
GTT
[ENA]
¡û
>W141760846
JOAI01000008
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
145559
145486
-
Asn
GTT
[ENA]
¡û
>W141761776
JOAY01000026
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
39624
39697
+
Asn
GTT
[ENA]
¡û
>W141761946
JOBB01010787
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
261
186
-
Asn
GTT
[ENA]
¡û
>W141763690
JOCF01000012
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
107936
108009
+
Asn
GTT
[ENA]
¡û
>W141766021
JODS01000019
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
79666
79741
+
Asn
GTT
[ENA]
¡û
>W141766907
JOEH01000004
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
439735
439808
+
Asn
GTT
[ENA]
¡û
>W141767527
JOER01000021
Actinomycetota
Kitasatospora aureofaciens [JOER]
39520
39447
-
Asn
GTT
[ENA]
¡û
>W141768754
JOFK01000020
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
58469
58542
+
Asn
GTT
[ENA]
¡û
>W141770058
JOGF01003690
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
908
983
+
Asn
GTT
[ENA]
¡û
>W141770103
JOGG01000032
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
39512
39439
-
Asn
GTT
[ENA]
¡û
>W141770154
JOGH01000010
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
68191
68118
-
Asn
GTT
[ENA]
¡û
>W141771642
JOHH01002805
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
1006
1079
+
Asn
GTT
[ENA]
¡û
>W141771975
JOHN01000048
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
32748
32823
+
Asn
GTT
[ENA]
¡û
>W141772018
JOHO01000005
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
38486
38413
-
Asn
GTT
[ENA]
¡û
>W141774351
JOJA01000003
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
5065
4992
-
Asn
GTT
[ENA]
¡û
>W141819685
JQMJ01000004
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
2473916
2473843
-
Asn
GTT
[ENA]
¡û
>W141819686
JQMJ01000004
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
2473804
2473729
-
Asn
GTT
[ENA]
¡û
>W141819809
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
2588617
2588544
-
Asn
GTT
[ENA]
¡û
>W141819982
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
4227988
4228063
+
Asn
GTT
[ENA]
¡û
>W1911083703
NNBO01000003
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
181758
181831
+
Asn
GTT
[ENA]
¡û
>W1911243748
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
5329446
5329519
+
Asn
GTT
[ENA]
¡û
>W1911243749
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
5329566
5329639
+
Asn
GTT
[ENA]
¡û
>W1911494816
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
5248316
5248389
+
Asn
GTT
[ENA]
¡û
>W1810073045
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
2490120
2490047
-
Asn
GTT
[ENA]
¡û
>W1810120783
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
2447246
2447173
-
Asn
GTT
[ENA]
¡û
>W1810121525
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
5480799
5480872
+
Asn
GTT
[ENA]
¡û
>W1810121526
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
5480922
5480995
+
Asn
GTT
[ENA]
¡û
>W1810173055
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
2808597
2808522
-
Asn
GTT
[ENA]
¡û
>W1810394723
PYBW01000098
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
19533
19460
-
Asn
GTT
[ENA]
¡û
>W1810684573
QKYN01000197
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
9024
9097
+
Asn
GTT
[ENA]
¡û
>W1810684574
QKYN01000197
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
9127
9200
+
Asn
GTT
[ENA]
¡û
>W1810693993
QLLT01000008
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
78573
78646
+
Asn
GTT
[ENA]
¡û
>W1810907992
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
4186449
4186376
-
Asn
GTT
[ENA]
¡û
>W1510013918
BBPL01000002
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
363566
363639
+
Asn
GTT
[ENA]
¡û
>W1510014000
BBPM01000017
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
144717
144644
-
Asn
GTT
[ENA]
¡û
>W1510014066
BBPN01000007
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
154565
154638
+
Asn
GTT
[ENA]
¡û
>W1510014067
BBPN01000007
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
154667
154742
+
Asn
GTT
[ENA]
¡û
>W1510014171
BBPO01000052
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
44873
44800
-
Asn
GTT
[ENA]
¡û
>W1510014172
BBPO01000052
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
44771
44696
-
Asn
GTT
[ENA]
¡û
>W1510014230
BBPP01000034
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
45380
45453
+
Asn
GTT
[ENA]
¡û
>W1510014231
BBPP01000034
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
45482
45557
+
Asn
GTT
[ENA]
¡û
>W1510014285
BBPQ01000009
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
77522
77449
-
Asn
GTT
[ENA]
¡û
>W1510014286
BBPQ01000009
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
77420
77345
-
Asn
GTT
[ENA]
¡û
>C11111787
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
2790494
2790421
-
Asn
GTT
[Ensembl]
¡û
>W1511311690
JPRF01000492
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
23996
24069
+
Asn
GTT
[ENA]
¡û
>W1511519331
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
819997
819924
-
Asn
GTT
[ENA]
¡û
>W1511529112
JYJF01000244
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
1860
1787
-
Asn
GTT
[ENA]
¡û
>W1511529113
JYJF01000244
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
1744
1671
-
Asn
GTT
[ENA]
¡û
>W1511529116
JYJF01000658
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
190
263
+
Asn
GTT
[ENA]
¡û
>W1511545234
JZKH01000012
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
81533
81606
+
Asn
GTT
[ENA]
¡û
>W1511545235
JZKH01000012
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
81668
81741
+
Asn
GTT
[ENA]
¡û
>W1511555618
JZWY01000072
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
25348
25423
+
Asn
GTT
[ENA]
¡û
>W1511590441
LBHA01000086
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
5687
5760
+
Asn
GTT
[ENA]
¡û
>W11148970
AEUD01000004
Actinomycetota
Gordonia neofelifaecis NRRL B-59395 [AEUD]
678
603
-
Asn
GTT
[ENA]
¡û
>W1511687890
LFVW01000080
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
5291
5218
-
Asn
GTT
[ENA]
¡û
>W1511696813
LGDO01000457
Actinomycetota
Streptomyces sp. XY431 [LGDO]
48575
48500
-
Asn
GTT
[ENA]
¡û
>C161037617
CP011853
Actinomycetota
Gordonia phthalatica QH-11 [CP011853]
2790161
2790236
+
Asn
GTT
[Ensembl]
¡û
>W1610650830
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2347632
2347559
-
Asn
GTT
[ENA]
¡û
>W1610722660
LMCT01000067
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
239799
239872
+
Asn
GTT
[ENA]
¡û
>W1610729335
LMHX01000045
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
239751
239824
+
Asn
GTT
[ENA]
¡û
>W1710544708
FOAZ01000019
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
170526
170453
-
Asn
GTT
[ENA]
¡û
>W1710544709
FOAZ01000019
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
170424
170349
-
Asn
GTT
[ENA]
¡û
>W1710765796
LIPD01000001
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
245479
245552
+
Asn
GTT
[ENA]
¡û
>W1710769523
LISX01000005
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
347219
347146
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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