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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457558 (72 seq.)
>W1710989217
LPVT01000006
Bacillota
Enterococcus pernyi [LPVT]
306523
306450
-
His
GTG
[ENA]
¡û
>W1711096541
LTHV01000148
Bacillota
Enterococcus sp. HMSC072H05 [LTHV]
781
856
+
His
GTG
[ENA]
¡û
>W1711099537
LTKO01000126
Bacillota
Enterococcus sp. HMSC064A12 [LTKO]
93699
93624
-
His
GTG
[ENA]
¡û
>W1711108394
LTTS01000079
Bacillota
Enterococcus sp. HMSC066C04 [LTTS]
53421
53346
-
His
GTG
[ENA]
¡û
>W1711114911
LTZR01000180
Bacillota
Enterococcus sp. HMSC14A10 [LTZR]
49573
49498
-
His
GTG
[ENA]
¡û
>W1711186720
LWOL01000092
Bacillota
Enterococcus sp. HMSC05C03 [LWOL]
36637
36562
-
His
GTG
[ENA]
¡û
>W1711187023
LWOS01000073
Bacillota
Enterococcus sp. HMSC29A04 [LWOS]
49571
49496
-
His
GTG
[ENA]
¡û
>W1711350287
MCRG01000010
Bacillota
Enterococcus mundtii [MCRG]
1223
1296
+
His
GTG
[ENA]
¡û
>W1711708562
MSTR01000008
Bacillota
Enterococcus mundtii [MSTR]
141391
141318
-
His
GTG
[ENA]
¡û
>W1712069940
NGMS01000001
Bacillota
Enterococcus mundtii [NGMS]
577399
577472
+
His
GTG
[ENA]
¡û
>W131010941
AHYV01000050
Bacillota
Enterococcus avium ATCC 14025 [AHYV]
98535
98460
-
His
GTG
[ENA]
¡û
>W131027359
AJAH01000023
Bacillota
Enterococcus mundtii ATCC 882 [AJAH]
236274
236201
-
His
GTG
[ENA]
¡û
>W131027579
AJAL01000007
Bacillota
Enterococcus raffinosus ATCC 49464 [AJAL]
122703
122628
-
His
GTG
[ENA]
¡û
>W131201450
ASWC01000001
Bacillota
Enterococcus mundtii ATCC 882 [ASWC]
851436
851509
+
His
GTG
[ENA]
¡û
>W131201685
ASWF01000006
Bacillota
Enterococcus raffinosus ATCC 49464 [ASWF]
2024
2099
+
His
GTG
[ENA]
¡û
>W131202041
ASWL01000008
Bacillota
Enterococcus avium ATCC 14025 [ASWL]
1942
2017
+
His
GTG
[ENA]
¡û
>WENV180146285
OAUF01000102
[OAUF] human gut metagenome; faeces
93727
93654
-
His
GTG
[ENA]
¢þ
>WENV180163405
OAVH01011024
[OAVH] human gut metagenome; faeces
892
965
+
His
GTG
[ENA]
¢þ
>WENV180406865
OBUQ01000100
[OBUQ] human gut metagenome; faeces
120562
120489
-
His
GTG
[ENA]
¢þ
>WENV180483117
OBZH01000135
[OBZH] human gut metagenome; faeces
1197
1270
+
His
GTG
[ENA]
¢þ
>WENV182799974
OJTY01000061
[OJTY] human gut metagenome; human gut
362
435
+
His
GTG
[ENA]
¢þ
>WENV182800595
OJUF01000049
[OJUF] human gut metagenome; human gut
50654
50581
-
His
GTG
[ENA]
¢þ
>WENV182807716
OJVY01000332
[OJVY] human gut metagenome; human gut
19145
19072
-
His
GTG
[ENA]
¢þ
>WENV182807807
OJVZ01005974
[OJVZ] human gut metagenome; human gut
319
246
-
His
GTG
[ENA]
¢þ
>WENV182818775
OJZY01000468
[OJZY] human gut metagenome; human gut
1151
1078
-
His
GTG
[ENA]
¢þ
>WENV182823128
OKBS01000070
[OKBS] human gut metagenome; human gut
9743
9816
+
His
GTG
[ENA]
¢þ
>WENV182845176
OKJA01000074
[OKJA] human gut metagenome; human gut
222
295
+
His
GTG
[ENA]
¢þ
>WENV182848606
OKKI01000761
[OKKI] human gut metagenome; human gut
300
373
+
His
GTG
[ENA]
¢þ
>WENV182849108
OKKN01000627
[OKKN] human gut metagenome; human gut
7755
7682
-
His
GTG
[ENA]
¢þ
>WENV182862183
OKPK01000074
[OKPK] human gut metagenome; human gut
222
295
+
His
GTG
[ENA]
¢þ
>WENV182862452
OKPM01002819
[OKPM] human gut metagenome; human gut
290
363
+
His
GTG
[ENA]
¢þ
>WENV182863634
OKPU01000142
[OKPU] human gut metagenome; human gut
32652
32579
-
His
GTG
[ENA]
¢þ
>WENV182945012
OKVJ01007259
[OKVJ] human gut metagenome; human gut
154
227
+
His
GTG
[ENA]
¢þ
>WENV182952037
OKVV01001222
[OKVV] human gut metagenome; human gut
7619
7546
-
His
GTG
[ENA]
¢þ
>WENV182963222
OKWP01001285
[OKWP] human gut metagenome; stool
344
271
-
His
GTG
[ENA]
¢þ
>WENV183238569
OLQZ01000379
[OLQZ] human gut metagenome; faeces
222
295
+
His
GTG
[ENA]
¢þ
>WENV183780714
PPYF01176548
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1978
1905
-
His
GTG
[ENA]
¢þ
>WENV183785938
PPYF01299093
[PPYF] human gut metagenome; stool from patient with Crohn's disease
480
553
+
His
GTG
[ENA]
¢þ
>W141383595
JDFT01000023
Bacillota
Enterococcus mundtii CRL35 [JDFT]
35887
35814
-
His
GTG
[ENA]
¡û
>WENV170540028
CWGS01000285
[CWGS] human gut metagenome; ENVO:feces
777
852
+
His
GTG
[ENA]
¢þ
>WENV170540586
CWHE01000191
[CWHE] human gut metagenome; ENVO:feces
777
852
+
His
GTG
[ENA]
¢þ
>WENV170540857
CWHL01000194
[CWHL] human gut metagenome; ENVO:feces
560
635
+
His
GTG
[ENA]
¢þ
>WENV170541358
CXPN01000564
[CXPN] human gut metagenome genome assembly hA5, contig hA5_contig005349.; ENVO:feces
1551
1626
+
His
GTG
[ENA]
¢þ
>WENV170541626
CXPR01000054
[CXPR] human gut metagenome genome assembly hA9, contig hA9_contig006182.; ENVO:feces
6151
6076
-
His
GTG
[ENA]
¢þ
>C181030412
CP018061
Bacillota
Enterococcus mundtii DSM 4838 [CP018061]
921267
921340
+
His
GTG
-
¡û
>C181062225
CP022340
Bacillota
Enterococcus mundtii EMB156 [CP022340]
1020989
1021062
+
His
GTG
-
¡û
>C191035393
CP025473
Bacillota
Enterococcus mundtii Pe161 [CP025473]
975639
975712
+
His
GTG
-
¡û
>C191063002
CP029066
Bacillota
Enterococcus mundtii Pe103 [CP029066]
1026758
1026831
+
His
GTG
-
¡û
>C191120832
CP034169
Bacillota
Enterococcus avium 352 [CP034169]
3252081
3252008
-
His
GTG
-
¡û
>C141000112
AP013036
Bacillota
Enterococcus mundtii QU 25 QU25 [AP013036]
1056416
1056489
+
His
GTG
[Ensembl]
¡û
>W1810045338
NBSL01000002
Bacillota
Enterococcus avium FDAARGOS_182 [NBSL]
942087
942160
+
His
GTG
[ENA]
¡û
>W1810045402
NBSM01000001
Bacillota
Enterococcus avium FDAARGOS_180 [NBSM]
140013
140086
+
His
GTG
[ENA]
¡û
>W1810111149
PHIL01000030
Bacillota
Enterococcus mundtii EM01 [PHIL]
137500
137427
-
His
GTG
[ENA]
¡û
>W1810311674
PTUS01000067
Bacillota
Enterococcus mundtii CVM N59820F [PTUS]
1339
1412
+
His
GTG
[ENA]
¡û
>W1810319749
PUAP01000076
Bacillota
Enterococcus mundtii CVM N55263 [PUAP]
370
297
-
His
GTG
[ENA]
¡û
>W1810401136
PYGR01000106
Bacillota
Enterococcus mundtii H18-EM [PYGR]
252
325
+
His
GTG
[ENA]
¡û
>W1810401187
PYGS01000165
Bacillota
Enterococcus mundtii K7-EM [PYGS]
1968
1895
-
His
GTG
[ENA]
¡û
>W1810401234
PYGT01000075
Bacillota
Enterococcus mundtii C11-EM [PYGT]
2031
1958
-
His
GTG
[ENA]
¡û
>W1810401268
PYGU01000117
Bacillota
Enterococcus mundtii P2-EM [PYGU]
1969
1896
-
His
GTG
[ENA]
¡û
>W1810817926
QSCV01000033
Bacillota
Enterococcus avium OF02-3AC [QSCV]
49203
49130
-
His
GTG
[ENA]
¡û
>W1511440762
JUPQ01000464
Bacillota
Enterococcus hirae 877_EHIR [JUPQ]
1314
1239
-
His
GTG
[ENA]
¡û
>W1511447849
JUZB01000293
Bacillota
Enterococcus avium 639_EFCM [JUZB]
594
669
+
His
GTG
[ENA]
¡û
>W1610021451
ATKJ02000020
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
742
817
+
His
GTG
[ENA]
¡û
>W1610066527
BCPU01000036
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
34697
34622
-
His
GTG
[ENA]
¡û
>W1610462487
FKLT01000101
Bacillota
Enterococcus faecium [FKLT]
20488
20413
-
His
GTG
[ENA]
¡û
>W1610844093
LPVT01000006
Bacillota
Enterococcus pernyi [LPVT]
306523
306450
-
His
GTG
[ENA]
¡û
>W1710018146
ATKJ02000020
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
742
817
+
His
GTG
[ENA]
¡û
>W1710063865
BCPU01000036
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
34697
34622
-
His
GTG
[ENA]
¡û
>W1710461657
FKLT01000101
Bacillota
Enterococcus faecium [FKLT]
20488
20413
-
His
GTG
[ENA]
¡û
>W1710569096
FOUC01000025
Bacillota
Enterococcus mundtii [FOUC]
1382
1455
+
His
GTG
[ENA]
¡û
>W1710659135
JXKF01000068
Bacillota
Enterococcus avium [JXKF]
338
413
+
His
GTG
[ENA]
¡û
>W1710659765
JXLA01000011
Bacillota
Enterococcus raffinosus [JXLA]
120561
120486
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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