This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457563 (116 seq.)
>WENV180043906
LQAJ01000052
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
109379
109305
-
Gly
GCC
[ENA]
¡û
>WENV180043929
LQAJ01000082
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
269
343
+
Gly
GCC
[ENA]
¡û
>WENV180043936
LQAJ01000082
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1282
1356
+
Gly
GCC
[ENA]
¡û
>WENV180044002
LQAJ01000199
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
22116
22042
-
Gly
GCC
[ENA]
¡û
>WENV180094377
MTBK01004085
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
587
661
+
Gly
GCC
[ENA]
¡û
>WENV180095016
MTBK01043850
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1129
1055
-
Gly
GCC
[ENA]
¡û
>WENV180095465
MTBK01069466
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
866
792
-
Gly
GCC
[ENA]
¡û
>WENV180597750
OCPL01032486
[OCPL] human gut metagenome; ENVO:feces
54
128
+
Gly
GCC
[ENA]
¡û
>WENV180862126
ODLE01036415
[ODLE] human metagenome; G_DNA_Tongue dorsum
673
599
-
Gly
GCC
[ENA]
¡û
>WENV180874061
ODLP01121501
[ODLP] human metagenome; G_DNA_Tongue dorsum
14
88
+
Gly
GCC
[ENA]
¡û
>WENV180880648
ODLZ01040741
[ODLZ] human metagenome; G_DNA_Tongue dorsum
253
327
+
Gly
GCC
[ENA]
¡û
>WENV180882407
ODMC01000038
[ODMC] human metagenome; G_DNA_Tongue dorsum
117347
117273
-
Gly
GCC
[ENA]
¡û
>WENV180884020
ODMC01032203
[ODMC] human metagenome; G_DNA_Tongue dorsum
239
313
+
Gly
GCC
[ENA]
¡û
>WENV180890981
ODMO01031038
[ODMO] human metagenome; G_DNA_Tongue dorsum
413
487
+
Gly
GCC
[ENA]
¡û
>WENV180895937
ODNI01000002
[ODNI] human metagenome; G_DNA_Tongue dorsum
1067
993
-
Gly
GCC
[ENA]
¡û
>WENV180900963
ODOJ01019845
[ODOJ] human metagenome; G_DNA_Tongue dorsum
239
313
+
Gly
GCC
[ENA]
¡û
>WENV180901599
ODOK01000803
[ODOK] human metagenome; G_DNA_Tongue dorsum
227
301
+
Gly
GCC
[ENA]
¡û
>WENV180952900
ODUI01003645
[ODUI] human metagenome; G_DNA_Tongue dorsum
291
217
-
Gly
GCC
[ENA]
¡û
>WENV180958965
ODUM01000008
[ODUM] human metagenome; G_DNA_Tongue dorsum
28791
28865
+
Gly
GCC
[ENA]
¡û
>WENV180963453
ODUN01181004
[ODUN] human metagenome; G_DNA_Stool
237
311
+
Gly
GCC
[ENA]
¡û
>WENV180989023
ODVL01028410
[ODVL] human metagenome; G_DNA_Tongue dorsum
522
448
-
Gly
GCC
[ENA]
¡û
>WENV180994398
ODVQ01080357
[ODVQ] human metagenome; G_DNA_Stool
161
87
-
Gly
GCC
[ENA]
¡û
>WENV181038989
ODXQ01007837
[ODXQ] human metagenome; G_DNA_Tongue dorsum
443
369
-
Gly
GCC
[ENA]
¡û
>WENV181039486
ODXQ01025179
[ODXQ] human metagenome; G_DNA_Tongue dorsum
345
419
+
Gly
GCC
[ENA]
¡û
>WENV181062239
ODYN01096781
[ODYN] human metagenome; G_DNA_Stool
181
255
+
Gly
GCC
[ENA]
¡û
>WENV181068463
ODZZ01000066
[ODZZ] human metagenome; G_DNA_Tongue dorsum
75
1
-
Gly
GCC
[ENA]
¡û
>WENV181069331
ODZZ01031899
[ODZZ] human metagenome; G_DNA_Tongue dorsum
75
1
-
Gly
GCC
[ENA]
¡û
>WENV181102567
OECT01005419
[OECT] human metagenome; G_DNA_Tongue dorsum
955
881
-
Gly
GCC
[ENA]
¡û
>WENV181105058
OEED01000884
[OEED] human metagenome; G_DNA_Tongue dorsum
3102
3028
-
Gly
GCC
[ENA]
¡û
>WENV181109327
OEEJ01026050
[OEEJ] human metagenome; G_DNA_Tongue dorsum
577
503
-
Gly
GCC
[ENA]
¡û
>WENV181111956
OEEL01000049
[OEEL] human metagenome; G_DNA_Tongue dorsum
23403
23477
+
Gly
GCC
[ENA]
¡û
>WENV181112729
OEEL01002626
[OEEL] human metagenome; G_DNA_Tongue dorsum
3959
4033
+
Gly
GCC
[ENA]
¡û
>WENV181150331
OEHW01001542
[OEHW] human metagenome; G_DNA_Tongue dorsum
13643
13714
+
Gly
GCC
[ENA]
¡û
>WENV181265439
OFGB01000033
[OFGB] mouse gut metagenome; faeces
68038
68112
+
Gly
GCC
[ENA]
¡û
>WENV181265481
OFGB01000080
[OFGB] mouse gut metagenome; faeces
45778
45852
+
Gly
GCC
[ENA]
¡û
>WENV181423805
OGCO01020132
[OGCO] human gut metagenome; human gut
330
256
-
Gly
GCC
[ENA]
¡û
>WENV181426654
OGCQ01009489
[OGCQ] human gut metagenome; human gut
2311
2385
+
Gly
GCC
[ENA]
¡û
>WENV181510203
OGGQ01044550
[OGGQ] metagenome; Human gut stool
655
729
+
Gly
GCC
[ENA]
¡û
>WENV181752208
OGQQ01002188
[OGQQ] human gut metagenome; faeces
324
398
+
Gly
GCC
[ENA]
¡û
>WENV181787086
OGRN01013022
[OGRN] human gut metagenome; faeces
735
661
-
Gly
GCC
[ENA]
¡û
>WENV181795567
OGRT01000367
[OGRT] human gut metagenome; faeces
27410
27484
+
Gly
GCC
[ENA]
¡û
>WENV181804430
OGSF01000681
[OGSF] human gut metagenome; fecal sample 3 from infant 5
5741
5667
-
Gly
GCC
[ENA]
¡û
>WENV181810536
OGSV01000203
[OGSV] human gut metagenome; fecal sample 4 from infant 3
43096
43022
-
Gly
GCC
[ENA]
¡û
>WENV181914428
OGYF01000242
[OGYF] human gut metagenome; faeces
4565
4491
-
Gly
GCC
[ENA]
¡û
>WENV182163396
OHMI01045039
[OHMI] human gut metagenome; feces
31
105
+
Gly
GCC
[ENA]
¡û
>WENV182207765
OHPW01040637
[OHPW] human gut metagenome; feces
663
589
-
Gly
GCC
[ENA]
¡û
>WENV182514264
OIWM01005185
[OIWM] human gut metagenome; faeces
572
498
-
Gly
GCC
[ENA]
¡û
>WENV182519488
OIWP01016216
[OIWP] human gut metagenome; faeces
2130
2056
-
Gly
GCC
[ENA]
¡û
>WENV182606562
OJJT01024383
[OJJT] metagenome; faeces
562
636
+
Gly
GCC
[ENA]
¡û
>WENV182639770
OJLA01122844
[OJLA] metagenome; faeces
396
470
+
Gly
GCC
[ENA]
¡û
>WENV182745787
OJQT01015108
[OJQT] human gut metagenome; stool sample
352
426
+
Gly
GCC
[ENA]
¡û
>WENV183002028
OLCM01013660
[OLCM] human gut metagenome; human gut
419
493
+
Gly
GCC
[ENA]
¡û
>WENV183097639
OLNE01006696
[OLNE] human gut metagenome; faeces
717
645
-
Gly
GCC
[ENA]
¡û
>WENV183112035
OLNP01000037
[OLNP] human gut metagenome; faeces
51280
51354
+
Gly
GCC
[ENA]
¡û
>WENV183132122
OLOB01000515
[OLOB] human gut metagenome; faeces
19227
19153
-
Gly
GCC
[ENA]
¡û
>WENV183161647
OLOV01012103
[OLOV] human gut metagenome; faeces
828
902
+
Gly
GCC
[ENA]
¡û
>WENV183165476
OLOX01006331
[OLOX] human gut metagenome; faeces
488
562
+
Gly
GCC
[ENA]
¡û
>WENV183174991
OLPE01058694
[OLPE] human gut metagenome; faeces
181
255
+
Gly
GCC
[ENA]
¡û
>WENV183187058
OLPO01005585
[OLPO] human gut metagenome; faeces
5863
5789
-
Gly
GCC
[ENA]
¡û
>WENV183191561
OLPR01015500
[OLPR] human gut metagenome; faeces
274
348
+
Gly
GCC
[ENA]
¡û
>WENV183229848
OLQT01000001
[OLQT] human gut metagenome; faeces
285158
285084
-
Gly
GCC
[ENA]
¡û
>WENV183266643
OLRT01006308
[OLRT] human gut metagenome; faeces
774
700
-
Gly
GCC
[ENA]
¡û
>WENV183272975
OLRX01001213
[OLRX] human gut metagenome; faeces
212
138
-
Gly
GCC
[ENA]
¡û
>WENV183279622
OLSB01000627
[OLSB] human gut metagenome; faeces
15485
15559
+
Gly
GCC
[ENA]
¡û
>WENV183286287
OLSE01006412
[OLSE] human gut metagenome; faeces
189
115
-
Gly
GCC
[ENA]
¡û
>WENV183293420
OLSK01000438
[OLSK] human gut metagenome; faeces
22115
22189
+
Gly
GCC
[ENA]
¡û
>WENV183299980
OLSN01072354
[OLSN] human gut metagenome; faeces
362
288
-
Gly
GCC
[ENA]
¡û
>WENV183379839
OLYC01121838
[OLYC] human gut metagenome; feces
279
205
-
Gly
GCC
[ENA]
¡û
>WENV183419849
OMAZ01066346
[OMAZ] human gut metagenome; feces
198
124
-
Gly
GCC
[ENA]
¡û
>WENV183654493
OQWA01051558
[OQWA] human gut metagenome; human gut
382
456
+
Gly
GCC
[ENA]
¡û
>WENV183659588
OQWM01036390
[OQWM] human gut metagenome; human gut
355
281
-
Gly
GCC
[ENA]
¡û
>WENV170561058
CZCA01002546
[CZCA] anaerobic digester metagenome; anaerobic digester
2192
2266
+
Gly
GCC
[ENA]
¡û
>WENV170561360
CZCA01007124
[CZCA] anaerobic digester metagenome; anaerobic digester
105
179
+
Gly
GCC
[ENA]
¡û
>WENV170561449
CZCA01009702
[CZCA] anaerobic digester metagenome; anaerobic digester
605
679
+
Gly
GCC
[ENA]
¡û
>WENV170561574
CZCA01014260
[CZCA] anaerobic digester metagenome; anaerobic digester
1031
1105
+
Gly
GCC
[ENA]
¡û
>WENV170635095
JDSF01000013
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
149
223
+
Gly
GCC
[ENA]
¡û
>WENV170635155
JDSF01000140
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
146
220
+
Gly
GCC
[ENA]
¡û
>WENV170635255
JDSF01000441
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
54
128
+
Gly
GCC
[ENA]
¡û
>WENV170635414
JDSF01015015
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
446
372
-
Gly
GCC
[ENA]
¡û
>WENV170674868
LCWY01012785
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
375
449
+
Gly
GCC
[ENA]
¡û
>WENV170678565
LDZU01002542
[LDZU] terrestrial metagenome; oil reservoir sample SB2
357
431
+
Gly
GCC
[ENA]
¡û
>WENV170685567
LFRM01098648
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12811
12737
-
Gly
GCC
[ENA]
¡û
>W2011317351
QWEQ01000004
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
234288
234214
-
Gly
GCC
[ENA]
¡û
>W2011317357
QWEQ01000004
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
19860
19786
-
Gly
GCC
[ENA]
¡û
>W2011317392
QWEQ01000043
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
3
77
+
Gly
GCC
[ENA]
¡û
>W2011317396
QWEQ01000049
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
75
1
-
Gly
GCC
[ENA]
¡û
>W2011338167
QXXF01000006
Bacillota
Clostridiales bacterium 16 [QXXF]
160720
160646
-
Gly
GCC
[ENA]
¡û
>W2011455226
RLIH01000032
Bacillota
Anaerosphaera sp. GS7-6-2 [RLIH]
20
94
+
Gly
GCC
[ENA]
¡û
>W2011622330
SLWV01000009
Bacillota
Marinisporobacter balticus DSM 102940 [SLWV]
38407
38333
-
Gly
GCC
[ENA]
¡û
>W2011622342
SLWV01000020
Bacillota
Marinisporobacter balticus DSM 102940 [SLWV]
758
832
+
Gly
GCC
[ENA]
¡û
>W2011622360
SLWV01000027
Bacillota
Marinisporobacter balticus DSM 102940 [SLWV]
49444
49370
-
Gly
GCC
[ENA]
¡û
>W2011622381
SLWV01000064
Bacillota
Marinisporobacter balticus DSM 102940 [SLWV]
2465
2391
-
Gly
GCC
[ENA]
¡û
>W2011951565
UWPH01000009
Bacillota
Bacilliculturomica massiliensis Marseille-P3303 [UWPH]
168458
168384
-
Gly
GCC
[ENA]
¡û
>W2011951592
UWPH01000025
Bacillota
Bacilliculturomica massiliensis Marseille-P3303 [UWPH]
374151
374225
+
Gly
GCC
[ENA]
¡û
>W2012081290
VLKH01000014
Bacillota
Sedimentibacter saalensis DSM 13558 [VLKH]
1102
1176
+
Gly
GCC
[ENA]
¡û
>W2012155440
VUNB01000001
Bacillota
Clostridiales Family XIII bacterium RF-744-FAT-WT-3 [VUNB]
375351
375425
+
Gly
GCC
[ENA]
¡û
>W2012156223
VUNQ01000029
Bacillota
Tissierella sp. DSM 105185 WCA3-693-APC-4? [VUNQ]
42342
42268
-
Gly
GCC
[ENA]
¡û
>W1610046199
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
108187
108113
-
Gly
GCC
[ENA]
¡û
>W1610046231
BBCE01000019
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
52215
52289
+
Gly
GCC
[ENA]
¡û
>W1610053812
BBQT01000003
Bacillota
Syntrophomonas wolfei subsp. methylbutyratica [BBQT]
213521
213595
+
Gly
GCC
[ENA]
¡û
>W1610605720
LFSF01000025
Bacillota
Clostridiales bacterium DTU073 [LFSF]
23627
23701
+
Gly
GCC
[ENA]
¡û
>W1610788716
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21236
21162
-
Gly
GCC
[ENA]
¡û
>W1610788732
LOHE01000078
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
27130
27056
-
Gly
GCC
[ENA]
¡û
>W1610788741
LOHE01000110
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
446
520
+
Gly
GCC
[ENA]
¡û
>W1610947625
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
102833
102907
+
Gly
GCC
[ENA]
¡û
>W1710042995
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
108187
108113
-
Gly
GCC
[ENA]
¡û
>W1710043027
BBCE01000019
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
52215
52289
+
Gly
GCC
[ENA]
¡û
>W1710050190
BBQT01000003
Bacillota
Syntrophomonas wolfei subsp. methylbutyratica [BBQT]
213521
213595
+
Gly
GCC
[ENA]
¡û
>W1710571805
FOWF01000005
Bacillota
Eubacterium pyruvativorans [FOWF]
44055
43981
-
Gly
GCC
[ENA]
¡û
>W1710571817
FOWF01000008
Bacillota
Eubacterium pyruvativorans [FOWF]
11375
11301
-
Gly
GCC
[ENA]
¡û
>W1710571836
FOWF01000033
Bacillota
Eubacterium pyruvativorans [FOWF]
3726
3800
+
Gly
GCC
[ENA]
¡û
>W1710578635
FPBT01000001
Bacillota
Eubacterium pyruvativorans [FPBT]
208803
208729
-
Gly
GCC
[ENA]
¡û
>W1710578655
FPBT01000008
Bacillota
Eubacterium pyruvativorans [FPBT]
66519
66593
+
Gly
GCC
[ENA]
¡û
>W1710578677
FPBT01000030
Bacillota
Eubacterium pyruvativorans [FPBT]
15921
15847
-
Gly
GCC
[ENA]
¡û
>W1710586132
FQWY01000016
Bacillota
Thermosyntropha lipolytica DSM 11003 [FQWY]
52689
52615
-
Gly
GCC
[ENA]
¡û
>W1710590744
FRBG01000026
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [FRBG]
444
518
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK