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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457563 (21 seq.)
>W1711476704
MJVX01000014
Campylobacterota
Campylobacter lari [MJVX]
23565
23491
-
Thr
GGT
[ENA]
¡û
>W1712043143
NFMM01000081
Campylobacterota
Campylobacter jejuni [NFMM]
1109
1183
+
Thr
GGT
[ENA]
¡û
>W1712043782
NFNE01000005
Campylobacterota
Campylobacter jejuni [NFNE]
479887
479961
+
Thr
GGT
[ENA]
¡û
>w005237
AAFK01000002
Campylobacterota
Campylobacter lari RM2100 [AAFK]
318931
319005
+
Thr
GGT
[ENA]
¡û
>WENV180229167
OBCH01001224
[OBCH] human gut metagenome; human gut
9
83
+
Pro
GGG
[ENA]
¢þ
>WENV180403146
OBRR01022973
[OBRR] human gut metagenome; ENVO:feces
444
370
-
Thr
GGT
[ENA]
¢þ
>WENV180562680
OCLB01044548
[OCLB] human gut metagenome; human gut
261
187
-
Thr
GGT
[ENA]
¢þ
>WENV183641590
OQVL01055330
[OQVL] human gut metagenome; human gut
855
781
-
Thr
GGT
[ENA]
¢þ
>WENV183657372
OQWI01009536
[OQWI] human gut metagenome; human gut
507
433
-
Thr
GGT
[ENA]
¢þ
>C181062584
CP022347
Campylobacterota
Campylobacter avium LMG 24591 [CP022347]
1109044
1108970
-
Thr
GGT
-
¡û
>C191153577
CP037746
Campylobacterota
Campylobacter volucris 2014D-0083 [CP037746]
1152080
1152006
-
Thr
GGT
-
¡û
>C191211224
LR134471
Campylobacterota
Campylobacter insulaenigrae NCTC12927 [LR134471]
389770
389844
+
Thr
GGT
-
¡û
>C191213197
LR134508
Campylobacterota
Campylobacter lari NCTC11937 [LR134508]
417808
417882
+
Thr
GGT
-
¡û
>C09103367
CP000932
Campylobacterota
Campylobacter lari RM2100 RM2100; ATCC BAA-1060D [CP000932]
412697
412771
+
Thr
GGT
[Ensembl]
¡û
>C151034143
CP007771
Campylobacterota
Campylobacter lari subsp. concheus LMG 11760 [CP007771]
408372
408446
+
Thr
GGT
[Ensembl]
¡û
>C151034232
CP007773
Campylobacterota
Campylobacter subantarcticus LMG 24377 [CP007773]
426222
426296
+
Thr
GGT
[Ensembl]
¡û
>C151034278
CP007774
Campylobacterota
Campylobacter volucris LMG 24379 [CP007774]
397672
397746
+
Thr
GGT
[Ensembl]
¡û
>C151034321
CP007775
Campylobacterota
Campylobacter lari NCTC 11845 [CP007775]
441283
441357
+
Thr
GGT
[Ensembl]
¡û
>C151034367
CP007776
Campylobacterota
Campylobacter lari CCUG 22395 [CP007776]
408134
408208
+
Thr
GGT
[Ensembl]
¡û
>C151034413
CP007777
Campylobacterota
Campylobacter lari RM16701 [CP007777]
405890
405964
+
Thr
GGT
[Ensembl]
¡û
>W1710553087
FOHH01000013
Campylobacterota
Campylobacter lari subsp. lari [FOHH]
1127
1201
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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