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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45772 (31 seq.)
>A171000882
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
342727
342640
-
Leu
GAG
-
¡û
>A171001035
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
325339
325252
-
Leu
GAG
-
¡û
>A171001279
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1016916
1016829
-
Leu
GAG
-
¡û
>A171001500
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
660340
660253
-
Leu
GAG
-
¡û
>A171004503
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
781361
781274
-
Leu
GAG
-
¡û
>WENV180275357
OBHT01013819
[OBHT] metagenome; hydrothermal vent
136
49
-
Leu
GAG
[ENA]
¢þ
>WENV180287935
OBIL01015516
[OBIL] metagenome; hydrothermal vent
336
423
+
Leu
GAG
[ENA]
¢þ
>WENV180317193
OBKJ01047939
[OBKJ] metagenome; hydrothermal vent
170
83
-
Leu
GAG
[ENA]
¢þ
>WENV180332586
OBLD01054749
[OBLD] metagenome; water
184
97
-
Leu
GAG
[ENA]
¢þ
>WENV181206345
OFAT01008798
[OFAT] metagenome; hydrothermal vent
154
241
+
Leu
GAG
[ENA]
¢þ
>WENV181206796
OFAW01007664
[OFAW] metagenome; hydrothermal vent
172
85
-
Leu
GAG
[ENA]
¢þ
>WENV181207645
OFAZ01009435
[OFAZ] metagenome; hydrothermal vent
526
439
-
Leu
GAG
[ENA]
¢þ
>WENV181207944
OFBA01004197
[OFBA] metagenome; hydrothermal vent
411
324
-
Leu
GAG
[ENA]
¢þ
>WENV181208406
OFBB01009144
[OFBB] metagenome; hydrothermal vent
279
366
+
Leu
GAG
[ENA]
¢þ
>WENV181208888
OFBC01020730
[OFBC] metagenome; hydrothermal vent
280
367
+
Leu
GAG
[ENA]
¢þ
>WENV181213041
OFBU01006015
[OFBU] metagenome; hydrothermal vent
398
485
+
Leu
GAG
[ENA]
¢þ
>WENV181213302
OFBV01000271
[OFBV] metagenome; hydrothermal vent
300
387
+
Leu
GAG
[ENA]
¢þ
>WENV181214657
OFBY01005599
[OFBY] metagenome; hydrothermal vent
500
413
-
Leu
GAG
[ENA]
¢þ
>WENV181215552
OFCA01002431
[OFCA] metagenome; hydrothermal vent
1145
1232
+
Leu
GAG
[ENA]
¢þ
>WENV181216164
OFCB01007085
[OFCB] metagenome; hydrothermal vent
935
848
-
Leu
GAG
[ENA]
¢þ
>WENV181216599
OFCC01006439
[OFCC] metagenome; hydrothermal vent
348
435
+
Leu
GAG
[ENA]
¢þ
>WENV181224058
OFDD01013162
[OFDD] metagenome; hydrothermal vent
174
87
-
Leu
GAG
[ENA]
¢þ
>WENV181224278
OFDE01004796
[OFDE] metagenome; hydrothermal vent
723
636
-
Leu
GAG
[ENA]
¢þ
>WENV181225456
OFDI01002186
[OFDI] metagenome; hydrothermal vent
1791
1704
-
Leu
GAG
[ENA]
¢þ
>At0920
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
97629
97716
+
Leu
GAG
[Ensembl]
¡û
>W1610001120
ACQW01000011
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
11356
11269
-
Leu
GAG
[ENA]
¡û
>W1610001137
ACQY01000004
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
54724
54637
-
Leu
GAG
[ENA]
¡û
>W1610001532
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
147899
147986
+
Leu
GAG
[ENA]
¡û
>W1610001628
ADCA01000002
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
4824
4911
+
Leu
GAG
[ENA]
¡û
>W1610018102
APMM01000031
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
54859
54772
-
Leu
GAG
[ENA]
¡û
>W1610018633
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
400606
400693
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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