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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45773 (23 seq.)
>A171000881
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
436067
435980
-
Leu
TAA
-
¡û
>A171001013
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1623213
1623298
+
Leu
TAA
-
¡û
>A171001267
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1757734
1757647
-
Leu
TAA
-
¡û
>A171001504
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
400090
400005
-
Leu
TAA
-
¡û
>A171002230
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
779632
779545
-
Leu
TAA
-
¡û
>A171004484
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1547251
1547164
-
Leu
TAA
-
¡û
>WENV180287713
OBIL01000807
[OBIL] metagenome; hydrothermal vent
536
623
+
Leu
TAA
[ENA]
¢þ
>WENV180332434
OBLD01008112
[OBLD] metagenome; water
266
353
+
Leu
TAA
[ENA]
¢þ
>WENV181206601
OFAW01000438
[OFAW] metagenome; hydrothermal vent
4011
4098
+
Leu
TAA
[ENA]
¢þ
>WENV181208723
OFBC01002690
[OFBC] metagenome; hydrothermal vent
459
546
+
Leu
TAA
[ENA]
¢þ
>WENV181213229
OFBU01029159
[OFBU] metagenome; hydrothermal vent
120
207
+
Leu
TAA
[ENA]
¢þ
>WENV181213529
OFBV01006380
[OFBV] metagenome; hydrothermal vent
100
13
-
Leu
TAA
[ENA]
¢þ
>WENV181215247
OFBZ01012030
[OFBZ] metagenome; hydrothermal vent
172
85
-
Leu
TAA
[ENA]
¢þ
>WENV181215697
OFCA01008480
[OFCA] metagenome; hydrothermal vent
809
722
-
Leu
TAA
[ENA]
¢þ
>WENV181216008
OFCB01001362
[OFCB] metagenome; hydrothermal vent
510
597
+
Leu
TAA
[ENA]
¢þ
>WENV181224190
OFDE01000636
[OFDE] metagenome; hydrothermal vent
1462
1549
+
Leu
TAA
[ENA]
¢þ
>WENV181224913
OFDG01020288
[OFDG] metagenome; hydrothermal vent
432
345
-
Leu
TAA
[ENA]
¢þ
>At0924
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
215210
215297
+
Leu
TAA
[Ensembl]
¡û
>W1610001116
ACQW01000004
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
38883
38796
-
Leu
TAA
[ENA]
¡û
>W1610001132
ACQY01000002
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
108309
108222
-
Leu
TAA
[ENA]
¡û
>W1610001550
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
596283
596196
-
Leu
TAA
[ENA]
¡û
>W1610001624
ADCA01000001
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
102877
102964
+
Leu
TAA
[ENA]
¡û
>W1610004293
AGJL01000031
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
13702
13615
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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