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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45782 (37 seq.)
>W1710935846
LOKT01000016
Actinomycetota
Nocardia donostiensis [LOKT]
44004
43919
-
Leu
GAG
[ENA]
¡û
>W1711178418
LWGR01000007
Actinomycetota
Nocardia terpenica [LWGR]
418971
418886
-
Leu
GAG
[ENA]
¡û
>W1711739077
MUBO01000137
Actinomycetota
Streptomyces daghestanicus [MUBO]
131462
131377
-
Leu
GAG
[ENA]
¡û
>W1711750411
MUMY01000012
Actinomycetota
Nocardia donostiensis [MUMY]
160818
160903
+
Leu
GAG
[ENA]
¡û
>C014847
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
3072602
3072518
-
Leu
GAG
[Ensembl]
¡û
>WENV180026071
FTIR01028136
[FTIR] metagenome; soil
292
207
-
Leu
GAG
[ENA]
¢þ
>WENV180031856
FTJU01000002
[FTJU] metagenome; soil
16082
15997
-
Leu
GAG
[ENA]
¢þ
>WENV180031888
FTJU01000600
[FTJU] metagenome; soil
25976
26061
+
Leu
GAG
[ENA]
¢þ
>W141241432
CAHH01000040
Actinomycetota
Timonella senegalensis JC301 [CAHH]
28884
28797
-
Leu
GAG
[ENA]
¡û
>W141241433
CAHH01000040
Actinomycetota
Timonella senegalensis JC301 [CAHH]
28777
28690
-
Leu
GAG
[ENA]
¡û
>W141241434
CAHH01000040
Actinomycetota
Timonella senegalensis JC301 [CAHH]
28582
28495
-
Leu
GAG
[ENA]
¡û
>W141278591
JAFQ01000004
Actinomycetota
Nocardia sp. BMG51109 [JAFQ]
6677780
6677693
-
Leu
GAG
[ENA]
¡û
>WENV183635427
OOIV01000009
[OOIV] human gut metagenome; Biopsy of a nasal polyp
177429
177342
-
Leu
GAG
[ENA]
¢þ
>WENV170011875
APMI01098335
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
695
784
+
Leu
GAG
[ENA]
¢þ
>C181090273
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
4332951
4333036
+
Leu
GAG
-
¡û
>C181090274
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
4333281
4333366
+
Leu
GAG
-
¡û
>C181200269
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
549449
549534
+
Leu
GAG
-
¡û
>W141759260
JNZF01000002
Actinomycetota
Nocardia carnea carneus [JNZF]
4248
4163
-
Leu
GAG
[ENA]
¡û
>W141775080
JOJL01000012
Actinomycetota
Actinoplanes subtropicus [JOJL]
90239
90154
-
Leu
GAG
[ENA]
¡û
>W1910433908
FVWC01000610
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 537 [FVWC]
748
663
-
Leu
GAG
[ENA]
¡û
>W1911422513
NXEH01000067
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
6036
5951
-
Leu
GAG
[ENA]
¡û
>W1810657159
QJHB01000005
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
415
330
-
Leu
GAG
[ENA]
¡û
>C10107935
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
1267912
1267825
-
Leu
GAG
[Ensembl]
¡û
>C10107936
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
1267779
1267692
-
Leu
GAG
[Ensembl]
¡û
>W1511524530
JYFC01000008
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
145341
145426
+
Leu
GAG
[ENA]
¡û
>W121125860
BAGI01000823
Actinomycetota
Nocardia terpenica NBRC 100888 [BAGI]
4342
4427
+
Leu
GAG
[ENA]
¡û
>W121126071
BAGM01000073
Actinomycetota
Nocardia veterana NBRC 100344 [BAGM]
158502
158417
-
Leu
GAG
[ENA]
¡û
>W121125154
BAFU01000236
Actinomycetota
Nocardia brevicatena NBRC 12119 [BAFU]
21992
22077
+
Leu
GAG
[ENA]
¡û
>W121125200
BAFV01000111
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
4149
4064
-
Leu
GAG
[ENA]
¡û
>W121125962
BAGK01000121
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
39703
39790
+
Leu
GAG
[ENA]
¡û
>W1610051803
BBHG01000992
Actinomycetota
Cellulomonas chitinilytica JCM 16927 [BBHG]
430
345
-
Leu
GAG
[ENA]
¡û
>W1610080323
BDCG01000030
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
64018
64105
+
Leu
GAG
[ENA]
¡û
>W1610080454
BDCJ01000009
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
218056
218141
+
Leu
GAG
[ENA]
¡û
>W1610986465
LWGR01000007
Actinomycetota
Nocardia terpenica [LWGR]
418971
418886
-
Leu
GAG
[ENA]
¡û
>W1710048181
BBHG01000992
Actinomycetota
Cellulomonas chitinilytica JCM 16927 [BBHG]
430
345
-
Leu
GAG
[ENA]
¡û
>W1710078882
BDCG01000030
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
64018
64105
+
Leu
GAG
[ENA]
¡û
>W1710079013
BDCJ01000009
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
218056
218141
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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