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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458039 (97 seq.)
>W1710792795
LJOP01000067
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
107180
107252
+
Ala
CGC
[ENA]
¡û
>W1710792816
LJOQ01000004
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
16534
16606
+
Ala
CGC
[ENA]
¡û
>W1710792888
LJOS01000047
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
24980
25052
+
Ala
CGC
[ENA]
¡û
>W1710792963
LJOV01000212
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
1408
1480
+
Ala
CGC
[ENA]
¡û
>W1710793001
LJOW01000038
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
27192
27264
+
Ala
CGC
[ENA]
¡û
>W1710793087
LJOX01000084
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
7506
7578
+
Ala
CGC
[ENA]
¡û
>W1710793127
LJOY01000081
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
5900
5828
-
Ala
CGC
[ENA]
¡û
>W1710882895
LMVE01000085
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
15962
16034
+
Ala
CGC
[ENA]
¡û
>W1711092424
LTEC01000001
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
140328
140400
+
Ala
CGC
[ENA]
¡û
>W1711116543
LUBZ01000032
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
17447
17375
-
Ala
CGC
[ENA]
¡û
>W1711261787
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1272005
1271933
-
Ala
CGC
[ENA]
¡û
>W1711283591
LZQD01000001
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
730728
730800
+
Ala
CGC
[ENA]
¡û
>W1711335609
MBQX01000155
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
19442
19514
+
Ala
CGC
[ENA]
¡û
>W1711335622
MBQY01000044
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
17654
17581
-
Ala
CGC
[ENA]
¡û
>W1711335744
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
218
146
-
Ala
CGC
[ENA]
¡û
>W131089963
AOFE01000009
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
17575
17647
+
Ala
CGC
[ENA]
¡û
>W131110120
APIY01000416
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
5858
5930
+
Ala
CGC
[ENA]
¡û
>W131110139
APIZ01000179
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
9983
10055
+
Ala
CGC
[ENA]
¡û
>w023451
AAXW01000014
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
56264
56187
-
Ala
CGC
[ENA]
¡û
>w021692
AAVW01000019
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
43466
43391
-
Ala
CGC
[ENA]
¡û
>W141022907
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
1155880
1155952
+
Ala
CGC
[ENA]
¡û
>w003608
AADV02000017
Cyanobacteriota
Crocosphaera watsonii WH 8501 [AADV]
19302
19227
-
Ala
CGC
[ENA]
¡û
>W141038428
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
888751
888679
-
Ala
CGC
[ENA]
¡û
>W141038750
ALWD01000078
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
7266
7340
+
Ala
CGC
[ENA]
¡û
>W08009355
ABOY01000003
Cyanobacteriota
Gloeothece citriformis PCC 7424 [ABOY]
158547
158475
-
Ala
CGC
[ENA]
¡û
>W08011361
ABVE01000008
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
41956
42031
+
Ala
CGC
[ENA]
¡û
>WENV181841049
OGVQ01000026
[OGVQ] freshwater metagenome; freshwater
31386
31314
-
Ala
CGC
[ENA]
¢þ
>WENV181852860
OGWH01005800
[OGWH] freshwater metagenome; freshwater
188
260
+
Ala
CGC
[ENA]
¢þ
>W141221423
AZYY01000163
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
9484
9556
+
Ala
CGC
[ENA]
¡û
>W141247010
CAQK01000384
Cyanobacteriota
Crocosphaera watsonii WH 8502 [CAQK]
6272
6200
-
Ala
CGC
[ENA]
¡û
>W141247065
CAQL01000973
Cyanobacteriota
Crocosphaera watsonii WH 0005 [CAQL]
2905
2977
+
Ala
CGC
[ENA]
¡û
>W141247084
CAQM01000320
Cyanobacteriota
Crocosphaera watsonii WH 0401 [CAQM]
3072
3144
+
Ala
CGC
[ENA]
¡û
>W141247113
CAQN01000188
Cyanobacteriota
Crocosphaera watsonii WH 0402 [CAQN]
5498
5570
+
Ala
CGC
[ENA]
¡û
>WENV183636043
OOJJ01011651
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
269
341
+
Ala
CGC
[ENA]
¢þ
>WENV170957080
MJUQ01007663
[MJUQ] soil metagenome; viral particles from soil sample PT1
230
302
+
Ala
CGC
[ENA]
¢þ
>WENV170983548
MWVV01049538
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
275
347
+
Ala
CGC
[ENA]
¢þ
>WENV170984222
MWVV01204745
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
166
238
+
Ala
CGC
[ENA]
¢þ
>WENV170984607
MWVV01361978
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
208
280
+
Ala
CGC
[ENA]
¢þ
>WENV170991925
MWWA01380940
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
246
174
-
Ala
CGC
[ENA]
¢þ
>WENV170992608
MWWB01054099
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
583
655
+
Ala
CGC
[ENA]
¢þ
>WENV170994870
MWWE01073849
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
381
309
-
Ala
CGC
[ENA]
¢þ
>C181043614
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
1252637
1252709
+
Ala
CGC
-
¡û
>C09103554
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
3774397
3774325
-
Ala
CGC
[Ensembl]
¡û
>W1910175525
BJCE01000307
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
4328
4400
+
Ala
CGC
[ENA]
¡û
>W1910175569
BJCF01000071
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
9329
9257
-
Ala
CGC
[ENA]
¡û
>W1910805270
MTPU01000033
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
7418
7345
-
Ala
CGC
[ENA]
¡û
>W1910859265
NBYN01000015
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
96225
96153
-
Ala
CGC
[ENA]
¡û
>W1910943173
NJHS01000020
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
20640
20568
-
Ala
CGC
[ENA]
¡û
>W1910943211
NJHT01000017
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
19996
20068
+
Ala
CGC
[ENA]
¡û
>W1910943245
NJHU01000017
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
19984
20056
+
Ala
CGC
[ENA]
¡û
>W1910943273
NJHV01000002
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
20489
20561
+
Ala
CGC
[ENA]
¡û
>W1910943319
NJHW01000008
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
22268
22196
-
Ala
CGC
[ENA]
¡û
>W1910943387
NJHX01000227
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
22160
22088
-
Ala
CGC
[ENA]
¡û
>W1910943436
NJHY01000321
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
24585
24513
-
Ala
CGC
[ENA]
¡û
>W1910943462
NJHZ01000092
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
36028
36100
+
Ala
CGC
[ENA]
¡û
>W1910943516
NJIA01000324
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
19196
19124
-
Ala
CGC
[ENA]
¡û
>W1911118762
NOLJ01000011
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
93115
93043
-
Ala
CGC
[ENA]
¡û
>W1911153669
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
1136845
1136772
-
Ala
CGC
[ENA]
¡û
>W1911153708
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
1222168
1222096
-
Ala
CGC
[ENA]
¡û
>W1911581780
PGEM01000074
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
8248
8320
+
Ala
CGC
[ENA]
¡û
>W1911638425
PVWN01000114
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
1918
1990
+
Ala
CGC
[ENA]
¡û
>W1911638981
PXOH01000001
Cyanobacteriota
Aphanothece hegewaldii CCALA 016 [PXOH]
100717
100791
+
Ala
CGC
[ENA]
¡û
>W1810271973
PRLH01000137
Cyanobacteriota
Cyanothece sp. BG0011 [PRLH]
109490
109565
+
Ala
CGC
[ENA]
¡û
>W1810355661
PVMC01000049
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
19588
19516
-
Ala
CGC
[ENA]
¡û
>C151004165
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
2229162
2229234
+
Ala
CGC
[Ensembl]
¡û
>W10106039
ACYA01000063
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
19123
19051
-
Ala
CGC
[ENA]
¡û
>W10106069
ACYB01000035
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
512971
512899
-
Ala
CGC
[ENA]
¡û
>C11106735
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
4488411
4488336
-
Ala
CGC
[Ensembl]
¡û
>C11106779
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
4488411
4488336
-
Ala
CGC
[Ensembl]
¡û
>W11108362
ACYA01000063
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
19123
19051
-
Ala
CGC
[ENA]
¡û
>W11108392
ACYB01000035
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
512971
512899
-
Ala
CGC
[ENA]
¡û
>W1511364917
JSDP01000255
Cyanobacteriota
Aphanizomenon flos-aquae 2012/KM1/D3 [JSDP]
21685
21613
-
Ala
CGC
[ENA]
¡û
>C161005321
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
355389
355461
+
Ala
CGC
[Ensembl]
¡û
>C161038913
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
7066901
7066829
-
Ala
CGC
[Ensembl]
¡û
>W1610084873
CDHJ01000147
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
7153
7226
+
Ala
CGC
[ENA]
¡û
>W121002175
AESD01000397
Cyanobacteriota
Crocosphaera watsonii WH 0003 [AESD]
6348
6276
-
Ala
CGC
[ENA]
¡û
>C131004488
CP003594
Cyanobacteriota
Synechococcus sp. PCC 7502 [CP003594]
3165793
3165721
-
Ala
CGC
[Ensembl]
¡û
>C131005093
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
740126
740054
-
Ala
CGC
[Ensembl]
¡û
>C131010347
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
1446434
1446362
-
Ala
CGC
[Ensembl]
¡û
>C131010348
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
1435100
1435028
-
Ala
CGC
[Ensembl]
¡û
>W1610656720
LJOP01000067
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
107180
107252
+
Ala
CGC
[ENA]
¡û
>W1610656741
LJOQ01000004
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
16534
16606
+
Ala
CGC
[ENA]
¡û
>W1610656852
LJOS01000047
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
24980
25052
+
Ala
CGC
[ENA]
¡û
>W1610656879
LJOT01000104
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
2877
2805
-
Ala
CGC
[ENA]
¡û
>W1610656967
LJOV01000212
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
1408
1480
+
Ala
CGC
[ENA]
¡û
>W1610657005
LJOW01000038
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
27192
27264
+
Ala
CGC
[ENA]
¡û
>W1610657091
LJOX01000084
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
7506
7578
+
Ala
CGC
[ENA]
¡û
>W1610657131
LJOY01000081
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
5900
5828
-
Ala
CGC
[ENA]
¡û
>W1610744821
LMVE01000085
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
15962
16034
+
Ala
CGC
[ENA]
¡û
>W1610926462
LTEC01000001
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
140328
140400
+
Ala
CGC
[ENA]
¡û
>W1610927785
LUBZ01000032
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
17447
17375
-
Ala
CGC
[ENA]
¡û
>W1610931004
LUFH01000071
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
1638
1566
-
Ala
CGC
[ENA]
¡û
>W1610979388
LWAJ01000102
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
6059
5987
-
Ala
CGC
[ENA]
¡û
>W1611023762
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1272005
1271933
-
Ala
CGC
[ENA]
¡û
>W1611066451
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
218
146
-
Ala
CGC
[ENA]
¡û
>W1710087974
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
2724639
2724711
+
Ala
CGC
[ENA]
¡û
>W1710089735
CDHJ01000147
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
7153
7226
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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