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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45837 (77 seq.)
>W1710864014
LMFO01000010
Bacillota
Paenibacillus sp. Root52 [LMFO]
17351
17264
-
Leu
CAG
[ENA]
¡û
>W1710864067
LMFO01000034
Bacillota
Paenibacillus sp. Root52 [LMFO]
4582
4669
+
Leu
CAG
[ENA]
¡û
>W131176723
ARKG01000088
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
18711
18798
+
Leu
CAG
[ENA]
¡û
>W1711270677
LZEL01000059
Bacillota
Paenibacillus polymyxa [LZEL]
362284
362198
-
Leu
CAG
[ENA]
¡û
>W1711270678
LZEL01000059
Bacillota
Paenibacillus polymyxa [LZEL]
285984
285895
-
Leu
CAG
[ENA]
¡û
>W1711677546
MRTP01000003
Bacillota
Paenibacillus rhizosphaerae [MRTP]
109836
109749
-
Leu
CAG
[ENA]
¡û
>W1711677547
MRTP01000003
Bacillota
Paenibacillus rhizosphaerae [MRTP]
17281
17195
-
Leu
CAG
[ENA]
¡û
>C171030302
CP014167
Bacillota
Paenibacillus yonginensis DCY84 [CP014167]
780029
780117
+
Leu
CAG
-
¡û
>C171038763
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
3250215
3250302
+
Leu
CAG
-
¡û
>C171038793
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
4739785
4739873
+
Leu
CAG
-
¡û
>C171038794
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
4830558
4830645
+
Leu
CAG
-
¡û
>W131227916
AUFO01000002
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
260507
260594
+
Leu
CAG
[ENA]
¡û
>W131227947
AUFO01000012
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
1916
2003
+
Leu
CAG
[ENA]
¡û
>W141000988
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
1494451
1494364
-
Leu
CAG
[ENA]
¡û
>W141073163
ASRY01000121
Bacillota
Paenibacillus maysiensis 1-49 [ASRY]
443
529
+
Leu
CAG
[ENA]
¡û
>W141073181
ASRY01000271
Bacillota
Paenibacillus maysiensis 1-49 [ASRY]
63098
63186
+
Leu
CAG
[ENA]
¡û
>W141073355
ASSC01000022
Bacillota
Paenibacillus forsythiae T98 [ASSC]
4984
5071
+
Leu
CAG
[ENA]
¡û
>W141276239
JADQ01000009
Bacillota
Paenibacillus sp. J14 [JADQ]
108085
107998
-
Leu
CAG
[ENA]
¡û
>W141276240
JADQ01000009
Bacillota
Paenibacillus sp. J14 [JADQ]
93331
93247
-
Leu
CAG
[ENA]
¡û
>W141276241
JADQ01000009
Bacillota
Paenibacillus sp. J14 [JADQ]
76412
76324
-
Leu
CAG
[ENA]
¡û
>WENV183726742
PJTO01000114
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
81921
81834
-
Leu
CAG
[ENA]
¢þ
>W141462580
JFHX01000051
Bacillota
Paenibacillus ehimensis A2 [JFHX]
1669
1582
-
Leu
CAG
[ENA]
¡û
>W141462581
JFHX01000058
Bacillota
Paenibacillus ehimensis A2 [JFHX]
12145
12058
-
Leu
CAG
[ENA]
¡û
>C181038466
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
938999
939086
+
Leu
CAG
-
¡û
>C181038612
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
1180703
1180790
+
Leu
CAG
-
¡û
>C181121272
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
5510747
5510661
-
Leu
CAG
-
¡û
>C181121273
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
5434283
5434194
-
Leu
CAG
-
¡û
>C181121302
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
1299170
1299083
-
Leu
CAG
-
¡û
>W1910126331
BGMM01000001
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
319442
319358
-
Leu
CAG
[ENA]
¡û
>W1910126332
BGMM01000001
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
203095
203011
-
Leu
CAG
[ENA]
¡û
>W1910126346
BGMM01000008
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
65986
66070
+
Leu
CAG
[ENA]
¡û
>W1910155217
BIMK01000001
Bacillota
Paenibacillus chibensis NBRC 15958 [BIMK]
271594
271506
-
Leu
CAG
[ENA]
¡û
>W1910155220
BIMK01000002
Bacillota
Paenibacillus chibensis NBRC 15958 [BIMK]
24208
24120
-
Leu
CAG
[ENA]
¡û
>W1910155221
BIMK01000002
Bacillota
Paenibacillus chibensis NBRC 15958 [BIMK]
20003
19916
-
Leu
CAG
[ENA]
¡û
>W1911144391
NPBR01000008
Bacillota
Paenibacillus sp. 7523-1 [NPBR]
67470
67381
-
Leu
CAG
[ENA]
¡û
>W1911178122
NQLZ01000013
Bacillota
Paenibacillus sp. 7541 [NQLZ]
33129
33217
+
Leu
CAG
[ENA]
¡û
>W1911178123
NQLZ01000013
Bacillota
Paenibacillus sp. 7541 [NQLZ]
115586
115672
+
Leu
CAG
[ENA]
¡û
>W1911551699
OXKC01000001
Bacillota
Paenibacillus polymyxa [OXKC]
610598
610512
-
Leu
CAG
[ENA]
¡û
>W1911608551
PNXP01000008
Bacillota
Paenibacillus polymyxa PIC73 [PNXP]
263
350
+
Leu
CAG
[ENA]
¡û
>C151048035
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
289620
289704
+
Leu
CAG
[Ensembl]
¡û
>C151048047
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
743911
743998
+
Leu
CAG
[Ensembl]
¡û
>C151048063
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
2263120
2263207
+
Leu
CAG
[Ensembl]
¡û
>C151048064
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
2366990
2367076
+
Leu
CAG
[Ensembl]
¡û
>C151048209
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
229571
229655
+
Leu
CAG
[Ensembl]
¡û
>C151048221
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
1159279
1159366
+
Leu
CAG
[Ensembl]
¡û
>C151048233
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
2291365
2291451
+
Leu
CAG
[Ensembl]
¡û
>C151048234
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
2407747
2407834
+
Leu
CAG
[Ensembl]
¡û
>C151065009
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
2253071
2252984
-
Leu
CAG
[Ensembl]
¡û
>C151065043
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
849823
849737
-
Leu
CAG
[Ensembl]
¡û
>C151065044
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
764541
764452
-
Leu
CAG
[Ensembl]
¡û
>W1510647522
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
2090753
2090666
-
Leu
CAG
[ENA]
¡û
>W1510647556
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
623746
623660
-
Leu
CAG
[ENA]
¡û
>W1510647557
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
546130
546041
-
Leu
CAG
[ENA]
¡û
>C11117536
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
460802
460889
+
Leu
CAG
[Ensembl]
¡û
>C11117570
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
1934127
1934213
+
Leu
CAG
[Ensembl]
¡û
>C11117571
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
2010440
2010529
+
Leu
CAG
[Ensembl]
¡û
>W121009957
AGFX01000041
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
151752
151664
-
Leu
CAG
[ENA]
¡û
>W121009958
AGFX01000041
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
53825
53737
-
Leu
CAG
[ENA]
¡û
>W1610049696
BBFE01000063
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
7864
7952
+
Leu
CAG
[ENA]
¡û
>W1610062870
BCNV01000001
Bacillota
Paenibacillus amylolyticus [BCNV]
891736
891823
+
Leu
CAG
[ENA]
¡û
>W1610062871
BCNV01000001
Bacillota
Paenibacillus amylolyticus [BCNV]
978742
978830
+
Leu
CAG
[ENA]
¡û
>W1610062909
BCNV01000006
Bacillota
Paenibacillus amylolyticus [BCNV]
1464
1551
+
Leu
CAG
[ENA]
¡û
>W121009921
AGFX01000017
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
4722
4635
-
Leu
CAG
[ENA]
¡û
>W1610726360
LMFO01000010
Bacillota
Paenibacillus sp. Root52 [LMFO]
17351
17264
-
Leu
CAG
[ENA]
¡û
>W1610726413
LMFO01000034
Bacillota
Paenibacillus sp. Root52 [LMFO]
4582
4669
+
Leu
CAG
[ENA]
¡û
>W1611030241
LZEL01000059
Bacillota
Paenibacillus polymyxa [LZEL]
362284
362198
-
Leu
CAG
[ENA]
¡û
>W1611030242
LZEL01000059
Bacillota
Paenibacillus polymyxa [LZEL]
285984
285895
-
Leu
CAG
[ENA]
¡û
>W1710046095
BBFE01000063
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
7864
7952
+
Leu
CAG
[ENA]
¡û
>W1710060346
BCNV01000001
Bacillota
Paenibacillus amylolyticus [BCNV]
891736
891823
+
Leu
CAG
[ENA]
¡û
>W1710060347
BCNV01000001
Bacillota
Paenibacillus amylolyticus [BCNV]
978742
978830
+
Leu
CAG
[ENA]
¡û
>W1710060385
BCNV01000006
Bacillota
Paenibacillus amylolyticus [BCNV]
1464
1551
+
Leu
CAG
[ENA]
¡û
>W1710554382
FOIK01000001
Bacillota
Paenibacillus sp. NFR01 [FOIK]
292089
292175
+
Leu
CAG
[ENA]
¡û
>W1710554383
FOIK01000001
Bacillota
Paenibacillus sp. NFR01 [FOIK]
395545
395631
+
Leu
CAG
[ENA]
¡û
>W1710554429
FOIK01000005
Bacillota
Paenibacillus sp. NFR01 [FOIK]
85621
85709
+
Leu
CAG
[ENA]
¡û
>W1710607559
FXAE01000004
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
177740
177653
-
Leu
CAG
[ENA]
¡û
>W1710607560
FXAE01000004
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
162981
162897
-
Leu
CAG
[ENA]
¡û
>W1710607561
FXAE01000004
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
146062
145974
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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