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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458396 (77 seq.)
>W1710874089
LMNH01000006
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
24559
24634
+
Ala
CGC
[ENA]
¡û
>W1710874874
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1190464
1190389
-
Ala
CGC
[ENA]
¡û
>W1710879970
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
886776
886701
-
Ala
CGC
[ENA]
¡û
>W1710880976
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
530645
530718
+
Ala
CGC
[ENA]
¡û
>W1710881008
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
827421
827496
+
Ala
CGC
[ENA]
¡û
>W1710881220
LMSX01000009
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
47166
47239
+
Ala
CGC
[ENA]
¡û
>W1711137999
LVCF01000004
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
63197
63272
+
Ala
CGC
[ENA]
¡û
>W1711491988
MKKA01000011
Actinomycetota
Ornithinimicrobium sp. CNJ-824 [MKKA]
297598
297523
-
Ala
CGC
[ENA]
¡û
>W131155919
AQOZ01000019
Actinomycetota
Nocardioides sp. Iso805N [AQOZ]
130903
130978
+
Ala
CGC
[ENA]
¡û
>W131217048
ATWJ01000012
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
300669
300594
-
Ala
CGC
[ENA]
¡û
>W131227579
AUFG01000022
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
22741
22666
-
Ala
CGC
[ENA]
¡û
>w012505
AAMN01000004
Actinomycetota
Janibacter sp. HTCC2649 [AAMN]
13087
13164
+
Ala
CGC
[ENA]
¡û
>WENV180098586
MTBK01255882
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
206
281
+
Ala
CGC
[ENA]
¢þ
>WENV180209244
OBAK01047786
[OBAK] marine metagenome; ENVO.00002150
108
183
+
Ala
CGC
[ENA]
¢þ
>WENV180363926
OBNZ01026382
[OBNZ] marine metagenome; ENVO:00002010
565
492
-
Ala
CGC
[ENA]
¢þ
>WENV181163259
OEIO01171284
[OEIO] marine metagenome; sea ice
268
341
+
Ala
CGC
[ENA]
¢þ
>WENV181189837
OEOF01255228
[OEOF] activated sludge metagenome; Activated Sludge
192
118
-
Ala
CGC
[ENA]
¢þ
>WENV181309633
OFIW01017677
[OFIW] marine metagenome; seawater
286
359
+
Ala
CGC
[ENA]
¢þ
>WENV181314031
OFJI01010338
[OFJI] marine metagenome; sea ice
471
398
-
Ala
CGC
[ENA]
¢þ
>WENV181371666
OFQV01038799
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
211
136
-
Ala
CGC
[ENA]
¢þ
>WENV181391568
OFRT01023363
[OFRT] seawater metagenome; seawater
419
346
-
Ala
CGC
[ENA]
¢þ
>WENV181392925
OFRX01017585
[OFRX] seawater metagenome; seawater
764
837
+
Ala
CGC
[ENA]
¢þ
>W141242917
CAIZ01000134
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
11501
11426
-
Ala
CGC
[ENA]
¡û
>W141243081
CAJC01000209
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
1657
1730
+
Ala
CGC
[ENA]
¡û
>WENV183619068
OOFP01023215
[OOFP] marine metagenome; seawater
419
346
-
Ala
CGC
[ENA]
¢þ
>WENV183629294
OOGP01017720
[OOGP] marine metagenome; seawater
764
837
+
Ala
CGC
[ENA]
¢þ
>WENV183629990
OOGR01002528
[OOGR] marine metagenome; seawater
800
873
+
Ala
CGC
[ENA]
¢þ
>WENV183631178
OOGU01045315
[OOGU] marine metagenome; sea ice
254
181
-
Ala
CGC
[ENA]
¢þ
>WENV183678099
ORJL011837076
[ORJL] groundwater metagenome; groundwater
135
61
-
Ala
CGC
[ENA]
¢þ
>WENV170011466
APMI01067364
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
492
567
+
Ala
CGC
[ENA]
¢þ
>WENV170011744
APMI01087326
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2396
2321
-
Ala
CGC
[ENA]
¢þ
>WENV170552070
CXWJ01036985
[CXWJ] wastewater metagenome; activated sludge
980
1055
+
Ala
CGC
[ENA]
¢þ
>WENV170553898
CXWK01036890
[CXWK] wastewater metagenome; activated sludge
2721
2646
-
Ala
CGC
[ENA]
¢þ
>WENV170568582
FLMP01052746
[FLMP] seawater metagenome; seawater
519
446
-
Ala
CGC
[ENA]
¢þ
>WENV170570997
FLOH01000049
[FLOH] marine metagenome; water
56323
56248
-
Ala
CGC
[ENA]
¢þ
>WENV170572212
FLOH01000624
[FLOH] marine metagenome; water
23490
23563
+
Ala
CGC
[ENA]
¢þ
>WENV170604036
FUWD010355565
[FUWD] metagenome; unknown
503
576
+
Ala
CGC
[ENA]
¢þ
>WENV170620698
FUWD013037114
[FUWD] metagenome; unknown
4636
4561
-
Ala
CGC
[ENA]
¢þ
>WENV170626818
FUWD013229707
[FUWD] metagenome; unknown
2328
2255
-
Ala
CGC
[ENA]
¢þ
>WENV170626823
FUWD013229727
[FUWD] metagenome; unknown
14777
14704
-
Ala
CGC
[ENA]
¢þ
>WENV170950521
MEHZ011501554
[MEHZ] marine metagenome; marine surface water
150
223
+
Ala
CGC
[ENA]
¢þ
>C181197163
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
3295262
3295337
+
Ala
CGC
-
¡û
>C191150896
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
579548
579623
+
Ala
CGC
-
¡û
>C191158365
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
654425
654498
+
Ala
CGC
-
¡û
>C191186692
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
4133674
4133749
+
Ala
CGC
-
¡û
>W1911495838
OBQK01000002
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
353017
352942
-
Ala
CGC
[ENA]
¡û
>W1911533118
OKQN01000007
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
282832
282906
+
Ala
CGC
[ENA]
¡û
>W1911817412
QZMN01000003
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
146021
146096
+
Ala
CGC
[ENA]
¡û
>W1810364573
PVTI01000027
Actinomycetota
Knoellia remsis ATCC BAA-1496 [PVTI]
46856
46930
+
Ala
CGC
[ENA]
¡û
>W1810594934
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
2599697
2599622
-
Ala
CGC
[ENA]
¡û
>SRA1023718
SRR035084.160050
454 Sequencing (SRP001805)
110
37
-
Ala
CGC
[SRA]
>SRA1024268
SRR035084.288110
454 Sequencing (SRP001805)
84
159
+
Ala
CGC
[SRA]
>SRA1024280
SRR035084.291525
454 Sequencing (SRP001805)
306
233
-
Ala
CGC
[SRA]
>C151090483
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
154309
154234
-
Ala
CGC
-
¡û
>SRA1046915
SRR035093.418173
454 Sequencing (SRP001814)
232
305
+
Ala
CGC
[SRA]
>SRA1047376
SRR035093.526786
454 Sequencing (SRP001814)
232
305
+
Ala
CGC
[SRA]
>W11125308
ADVI01000094
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
175894
175819
-
Ala
CGC
[ENA]
¡û
>W1511540030
JZDQ01000004
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
77960
78035
+
Ala
CGC
[ENA]
¡û
>W11155969
AFAQ01001944
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
378
453
+
Ala
CGC
[ENA]
¡û
>W1610027085
AVPI01000034
Actinomycetota
Knoellia flava TL1 [AVPI]
73193
73118
-
Ala
CGC
[ENA]
¡û
>W1610027137
AVPJ01000021
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
21658
21585
-
Ala
CGC
[ENA]
¡û
>W1610027179
AVPK01000010
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
82548
82473
-
Ala
CGC
[ENA]
¡û
>W1610736435
LMNH01000006
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
24559
24634
+
Ala
CGC
[ENA]
¡û
>W1610737220
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1190464
1190389
-
Ala
CGC
[ENA]
¡û
>W1610742316
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
886776
886701
-
Ala
CGC
[ENA]
¡û
>W1610743322
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
530645
530718
+
Ala
CGC
[ENA]
¡û
>W1610743354
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
827421
827496
+
Ala
CGC
[ENA]
¡û
>W1610743566
LMSX01000009
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
47166
47239
+
Ala
CGC
[ENA]
¡û
>W1610949085
LVCF01000004
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
63197
63272
+
Ala
CGC
[ENA]
¡û
>W1710023250
AVPI01000034
Actinomycetota
Knoellia flava TL1 [AVPI]
73193
73118
-
Ala
CGC
[ENA]
¡û
>W1710023302
AVPJ01000021
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
21658
21585
-
Ala
CGC
[ENA]
¡û
>W1710023344
AVPK01000010
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
82548
82473
-
Ala
CGC
[ENA]
¡û
>W1710506066
FMUH01000001
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
383808
383733
-
Ala
CGC
[ENA]
¡û
>W1710515948
FNCF01000001
Actinomycetota
Klenkia brasiliensis [FNCF]
223466
223391
-
Ala
CGC
[ENA]
¡û
>W1710520327
FNFN01000002
Actinomycetota
Nocardioides sp. YR527 [FNFN]
36014
35939
-
Ala
CGC
[ENA]
¡û
>W1710524364
FNIR01000005
Actinomycetota
Klenkia soli [FNIR]
171030
170955
-
Ala
CGC
[ENA]
¡û
>W1710558766
FOMD01000002
Actinomycetota
Klenkia taihuensis [FOMD]
225075
225000
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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