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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458398 (89 seq.)
>W1710880226
LMSE01000003
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
284103
284030
-
Glu
CTC
[ENA]
¡û
>W1711021444
LQZG01000003
Actinomycetota
Janibacter melonis [LQZG]
42352
42425
+
Glu
CTC
[ENA]
¡û
>W1711074689
LSJT01000093
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
13203
13276
+
Glu
CTC
[ENA]
¡û
>W1711138036
LVCF01000043
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
189504
189431
-
Glu
CTC
[ENA]
¡û
>W1711491995
MKKA01000033
Actinomycetota
Ornithinimicrobium sp. CNJ-824 [MKKA]
183095
183022
-
Glu
CTC
[ENA]
¡û
>W1711664272
MQVT01000030
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
17724
17797
+
Glu
CTC
[ENA]
¡û
>W1711664284
MQVU01000002
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
138771
138844
+
Glu
CTC
[ENA]
¡û
>W1711793244
MWLL01000198
Actinomycetota
Kineosporia sp. R_H_3 [MWLL]
2188
2261
+
Glu
CTC
[ENA]
¡û
>W1711793307
MWLN01000072
Actinomycetota
Kineosporia sp. A_224 A 224 [MWLN]
11465
11392
-
Glu
CTC
[ENA]
¡û
>W1711796431
MWQN01000001
Actinomycetota
Embleya scabrispora scabrisporus [MWQN]
1952573
1952498
-
Glu
CTC
[ENA]
¡û
>W1711796432
MWQN01000001
Actinomycetota
Embleya scabrispora scabrisporus [MWQN]
1952445
1952370
-
Glu
CTC
[ENA]
¡û
>C171022212
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
995112
995185
+
Glu
CTC
-
¡û
>W131161598
AQXW01000003
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
242754
242827
+
Glu
CTC
[ENA]
¡û
>W131166325
ARCJ01000035
Actinomycetota
Embleya scabrispora DSM 41855 [ARCJ]
94574
94499
-
Glu
CTC
[ENA]
¡û
>W131217020
ATWJ01000007
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
435599
435672
+
Glu
CTC
[ENA]
¡û
>WENV180098239
MTBK01235129
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1290
1363
+
Glu
CTC
[ENA]
¢þ
>WENV180284520
OBID01051693
[OBID] metagenome; sludge
202
129
-
Glu
CTC
[ENA]
¢þ
>WENV180291055
OBIV01002032
[OBIV] soil metagenome; Clay
741
668
-
Glu
CTC
[ENA]
¢þ
>WENV180343737
OBLK01075890
[OBLK] soil metagenome; Clay
349
276
-
Glu
CTC
[ENA]
¢þ
>WENV180356862
OBNL01056678
[OBNL] marine metagenome; ENVO:00002010
140
67
-
Glu
CTC
[ENA]
¢þ
>WENV180360933
OBNU01063827
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
160
87
-
Glu
CTC
[ENA]
¢þ
>WENV180377193
OBON01002708
[OBON] marine metagenome; sea water
1403
1476
+
Glu
CTC
[ENA]
¢þ
>W141039310
ALWX01000045
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
25095
25022
-
Glu
CTC
[ENA]
¡û
>WENV180689910
OCZB010229278
[OCZB] metagenome; Oyster Gut Contents
136
63
-
Glu
CTC
[ENA]
¢þ
>WENV180690191
OCZS010000493
[OCZS] soil metagenome; soil
10657
10730
+
Glu
CTC
[ENA]
¢þ
>WENV181126389
OEFV01062333
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
154
227
+
Glu
CTC
[ENA]
¢þ
>WENV181166394
OEIU01000211
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
30515
30442
-
Glu
CTC
[ENA]
¢þ
>WENV181172437
OEIV010695979
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
81
154
+
Glu
CTC
[ENA]
¢þ
>WENV181295601
OFHI01080993
[OFHI] soil metagenome; Clay
254
179
-
Glu
CTC
[ENA]
¢þ
>WENV181298248
OFHL01060937
[OFHL] soil metagenome; Clay
460
533
+
Glu
CTC
[ENA]
¢þ
>WENV181311287
OFJB01000573
[OFJB] sludge metagenome; sludge
14412
14339
-
Glu
CTC
[ENA]
¢þ
>WENV181372348
OFQW01050053
[OFQW] wastewater metagenome; Exp Tend NO 90WW
170
95
-
Glu
CTC
[ENA]
¢þ
>WENV181381307
OFRE01058731
[OFRE] wastewater metagenome; Exp Tend NO 50WW
529
602
+
Glu
CTC
[ENA]
¢þ
>WENV181390425
OFRO01047772
[OFRO] wastewater metagenome; Exp Tend NO 10WW
689
616
-
Glu
CTC
[ENA]
¢þ
>WENV183627582
OOGL01014192
[OOGL] marine metagenome; sea ice
1004
1077
+
Glu
CTC
[ENA]
¢þ
>WENV183629685
OOGQ01001052
[OOGQ] marine metagenome; seawater
651
578
-
Glu
CTC
[ENA]
¢þ
>WENV183630021
OOGR01004321
[OOGR] marine metagenome; seawater
121
48
-
Glu
CTC
[ENA]
¢þ
>WENV183666096
ORJL010519829
[ORJL] groundwater metagenome; groundwater
170
97
-
Glu
CTC
[ENA]
¢þ
>WENV183707812
PDWI01010787
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10158
10084
-
Glu
CTC
[ENA]
¢þ
>WENV183718442
PDWJ01004080
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3912
3838
-
Glu
CTC
[ENA]
¢þ
>WENV170010953
APMI01036102
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2658
2585
-
Glu
CTC
[ENA]
¢þ
>WENV170567890
FLMP01008770
[FLMP] seawater metagenome; seawater
1024
1099
+
Glu
CTC
[ENA]
¢þ
>WENV170571078
FLOH01000065
[FLOH] marine metagenome; water
310334
310409
+
Glu
CTC
[ENA]
¢þ
>WENV170571899
FLOH01000366
[FLOH] marine metagenome; water
62245
62170
-
Glu
CTC
[ENA]
¢þ
>WENV170572292
FLOH01000704
[FLOH] marine metagenome; water
21708
21635
-
Glu
CTC
[ENA]
¢þ
>WENV170627404
FUWD013232685
[FUWD] metagenome; unknown
2977
2902
-
Glu
CTC
[ENA]
¢þ
>WENV170627495
FUWD013232959
[FUWD] metagenome; unknown
381254
381179
-
Glu
CTC
[ENA]
¢þ
>WENV170949445
MEHZ011419227
[MEHZ] marine metagenome; marine surface water
289
214
-
Glu
CTC
[ENA]
¢þ
>WENV170979823
MTKZ01109453
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
502
575
+
Glu
CTC
[ENA]
¢þ
>C181197144
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
90991
91064
+
Glu
CTC
-
¡û
>C191150925
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
2745290
2745216
-
Glu
CTC
-
¡û
>C191158392
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
2494348
2494275
-
Glu
CTC
-
¡û
>W141766749
JOEE01000004
Actinomycetota
Phycicoccus jejuensis [JOEE]
206894
206967
+
Glu
CTC
[ENA]
¡û
>W1910141301
BIFH01000046
Actinomycetota
Embleya hyalina NBRC 13850 [BIFH]
35957
36032
+
Glu
CTC
[ENA]
¡û
>W1910141302
BIFH01000046
Actinomycetota
Embleya hyalina NBRC 13850 [BIFH]
36082
36156
+
Glu
CTC
[ENA]
¡û
>W1911495846
OBQK01000004
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
262153
262080
-
Glu
CTC
[ENA]
¡û
>W1911533146
OKQN01000012
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
58082
58009
-
Glu
CTC
[ENA]
¡û
>W1911584656
PIPF01000013
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
90770
90843
+
Glu
CTC
[ENA]
¡û
>W1911817417
QZMN01000004
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
20938
21011
+
Glu
CTC
[ENA]
¡û
>W1810173620
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
786065
785992
-
Glu
CTC
[ENA]
¡û
>W1810594938
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
2121823
2121750
-
Glu
CTC
[ENA]
¡û
>W1810595094
QGDQ01000001
Actinomycetota
Quadrisphaera granulorum DSM 44889 [QGDQ]
368082
368155
+
Glu
CTC
[ENA]
¡û
>W1810701906
QMFW01000002
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
17776
17849
+
Glu
CTC
[ENA]
¡û
>W1810705017
QMIG01000015
Actinomycetota
Phytoactinopolyspora halophila YIM 96934 [QMIG]
75219
75144
-
Glu
CTC
[ENA]
¡û
>C151039209
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
2114221
2114148
-
Glu
CTC
[Ensembl]
¡û
>SRA1025100
SRR035084.484263
454 Sequencing (SRP001805)
182
107
-
Glu
CTC
[SRA]
>SRA1046170
SRR035093.249644
454 Sequencing (SRP001814)
359
434
+
Glu
CTC
[SRA]
>SRA1047512
SRR035093.561732
454 Sequencing (SRP001814)
211
286
+
Glu
CTC
[SRA]
>SRA1052986
SRR035098.313387
454 Sequencing (SRP001819)
97
172
+
Glu
CTC
[SRA]
>W11138478
AEIQ01000127
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
12781
12708
-
Glu
CTC
[ENA]
¡û
>W1511629613
LDCM01000003
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
281960
282033
+
Glu
CTC
[ENA]
¡û
>WENV058051
AACY023315763
Marine microbial communities from Global Ocean Sampling (GOS)
879
804
-
Glu
CTC
[ENA]
>W1610051270
BBGR01001231
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
396
469
+
Glu
CTC
[ENA]
¡û
>W1610068261
BCRE01000094
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
12176
12103
-
Glu
CTC
[ENA]
¡û
>W1610069606
BCSQ01000003
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
22407
22334
-
Glu
CTC
[ENA]
¡û
>W1610072294
BCUV01000006
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
718568
718495
-
Glu
CTC
[ENA]
¡û
>W1610078150
BDAR01000008
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
690817
690744
-
Glu
CTC
[ENA]
¡û
>W121126652
BAHD01000076
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
4366
4291
-
Glu
CTC
[ENA]
¡û
>WENV074361
AACY023971386
Marine microbial communities from Global Ocean Sampling (GOS)
76
153
+
Glu
CTC
[ENA]
>W1610742572
LMSE01000003
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
284103
284030
-
Glu
CTC
[ENA]
¡û
>W1610869732
LQZG01000003
Actinomycetota
Janibacter melonis [LQZG]
42352
42425
+
Glu
CTC
[ENA]
¡û
>W1610913994
LSJT01000093
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
13203
13276
+
Glu
CTC
[ENA]
¡û
>W1610949122
LVCF01000043
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
189504
189431
-
Glu
CTC
[ENA]
¡û
>W1710047669
BBGR01001231
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
396
469
+
Glu
CTC
[ENA]
¡û
>W1710065634
BCRE01000094
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
12176
12103
-
Glu
CTC
[ENA]
¡û
>W1710066979
BCSQ01000003
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
22407
22334
-
Glu
CTC
[ENA]
¡û
>W1710069496
BCUV01000006
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
718568
718495
-
Glu
CTC
[ENA]
¡û
>W1710076709
BDAR01000008
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
690817
690744
-
Glu
CTC
[ENA]
¡û
>W1710606078
FWXN01000001
Actinomycetota
Janibacter indicus [FWXN]
196854
196927
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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