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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458543 (128 seq.)
>W131010425
AHYM01000007
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
259887
259817
-
Cys
GCA
[ENA]
¡û
>W131037552
AMFE01000017
Bacillota
Lactococcus garvieae Tac2 [AMFE]
55153
55083
-
Cys
GCA
[ENA]
¡û
>W1711021350
LQZE01000026
Bacillota
Streptococcus oralis [LQZE]
124
196
+
Cys
GCA
[ENA]
¡û
>W1711228303
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
305364
305434
+
Cys
GCA
[ENA]
¡û
>W131202462
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1267646
1267576
-
Cys
GCA
[ENA]
¡û
>W131234715
AUKZ01000013
Bacillota
Streptococcus castoreus DSM 17536 [AUKZ]
39695
39765
+
Cys
GCA
[ENA]
¡û
>W1711744862
MUIZ01000003
Bacillota
Lactococcus petauri 159469 [MUIZ]
62780
62710
-
Cys
GCA
[ENA]
¡û
>W1711942767
NBBK01000006
Bacillota
Lactococcus garvieae [NBBK]
79989
79919
-
Cys
GCA
[ENA]
¡û
>WENV180182207
OAWO01001744
[OAWO] human gut metagenome; faeces
158
88
-
Cys
GCA
[ENA]
¡û
>W141035107
ALKT01000050
Bacillota
Streptococcus suis 12814 [ALKT]
24303
24233
-
Cys
GCA
[ENA]
¡û
>W141037180
ALNB01000015
Bacillota
Streptococcus suis YS64 [ALNB]
68772
68842
+
Cys
GCA
[ENA]
¡û
>WENV180454973
OBXO01000209
[OBXO] human gut metagenome; faeces
44603
44673
+
Cys
GCA
[ENA]
¡û
>W141065595
AQQB01000011
Bacillota
Streptococcus suis EA1832.92 [AQQB]
64448
64518
+
Cys
GCA
[ENA]
¡û
>W141096195
AVFE01000008
Bacillota
Lactococcus garvieae TRF1 [AVFE]
40228
40158
-
Cys
GCA
[ENA]
¡û
>W141238076
BBJW01000002
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
77438
77368
-
Cys
GCA
[ENA]
¡û
>WENV182517937
OIWP01000028
[OIWP] human gut metagenome; faeces
146216
146286
+
Cys
GCA
[ENA]
¡û
>WENV183276707
OLRZ01020400
[OLRZ] human gut metagenome; faeces
1497
1567
+
Cys
GCA
[ENA]
¡û
>WENV183511305
OMJG01000019
[OMJG] food metagenome; Cotija cheese
36532
36462
-
Cys
GCA
[ENA]
¡û
>WENV170547738
CXTS01000033
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
244
174
-
Cys
GCA
[ENA]
¡û
>WENV170548331
CXUD01001615
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
168
98
-
Cys
GCA
[ENA]
¡û
>WENV170549729
CXVH01001487
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
140
70
-
Cys
GCA
[ENA]
¡û
>WENV170549770
CXVI01000126
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
72
142
+
Cys
GCA
[ENA]
¡û
>C181001741
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
900912
900842
-
Cys
GCA
-
¡û
>C191001867
AP018400
Bacillota
Streptococcus ruminantium GUT187T [AP018400]
1854363
1854433
+
Cys
GCA
-
¡û
>C191044512
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
298594
298664
+
Cys
GCA
-
¡û
>C191079305
CP031733
Bacillota
Streptococcus chenjunshii Z15 [CP031733]
258598
258528
-
Cys
GCA
-
¡û
>W1910001856
ASAQ01000010
Bacillota
Streptococcus suis S33 [ASAQ]
64440
64510
+
Cys
GCA
[ENA]
¡û
>W1910583253
JXJV01000023
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
26791
26861
+
Cys
GCA
[ENA]
¡û
>W1910583270
JXJW01000001
Bacillota
Lactococcus piscium DSM 6634 [JXJW]
26502
26572
+
Cys
GCA
[ENA]
¡û
>W1910583313
JXJX01000002
Bacillota
Lactococcus plantarum DSM 20686 [JXJX]
57261
57191
-
Cys
GCA
[ENA]
¡û
>W1910641557
LTDA01000011
Bacillota
Lactococcus garvieae KS1546 [LTDA]
310569
310639
+
Cys
GCA
[ENA]
¡û
>W1911494580
OBKP01000005
Bacillota
Lactococcus piscium CMTALT17 [OBKP]
53792
53862
+
Cys
GCA
[ENA]
¡û
>W1911532471
OGVB01000034
Bacillota
Lactococcus piscium CMTALT02 [OGVB]
57231
57301
+
Cys
GCA
[ENA]
¡û
>W1810907543
QVHV01000001
Bacillota
Lactococcus petauri AM13-9 [QVHV]
137546
137476
-
Cys
GCA
[ENA]
¡û
>W1810915123
QVQY01000007
Bacillota
Streptococcus chenjunshii Z2 [QVQY]
58967
58897
-
Cys
GCA
[ENA]
¡û
>W1810915153
QVQZ01000003
Bacillota
Streptococcus chenjunshii Z1(2018) [QVQZ]
48576
48646
+
Cys
GCA
[ENA]
¡û
>C151104020
LN774769
Bacillota
Lactococcus piscium MKFS47 [LN774769]
562010
562080
+
Cys
GCA
[Ensembl]
¡û
>W2010075559
BCEP01000035
Bacillota
Streptococcus ruminantium MO492 [BCEP]
85158
85228
+
Cys
GCA
[ENA]
¡û
>W2010075588
BCEQ01000123
Bacillota
Streptococcus ruminantium MO505 [BCEQ]
43583
43653
+
Cys
GCA
[ENA]
¡û
>W2010075618
BCER01000015
Bacillota
Streptococcus ruminantium MO533 [BCER]
7876
7806
-
Cys
GCA
[ENA]
¡û
>W2010075647
BCES01000013
Bacillota
Streptococcus ruminantium MO402 [BCES]
7678
7608
-
Cys
GCA
[ENA]
¡û
>W2010075722
BCET01000032
Bacillota
Streptococcus ruminantium MO430 [BCET]
8481
8411
-
Cys
GCA
[ENA]
¡û
>W2010075753
BCEU01000016
Bacillota
Streptococcus ruminantium MO449 [BCEU]
72094
72164
+
Cys
GCA
[ENA]
¡û
>W2010075778
BCEV01000008
Bacillota
Streptococcus ruminantium MO498 [BCEV]
198844
198914
+
Cys
GCA
[ENA]
¡û
>W2010075852
BCEW01000044
Bacillota
Streptococcus ruminantium MO512 [BCEW]
86214
86284
+
Cys
GCA
[ENA]
¡û
>W2010075897
BCEX01000029
Bacillota
Streptococcus ruminantium MO557 [BCEX]
280466
280536
+
Cys
GCA
[ENA]
¡û
>W2010075932
BCEY01000032
Bacillota
Streptococcus ruminantium DTK377 [BCEY]
69444
69514
+
Cys
GCA
[ENA]
¡û
>W2010075961
BCEZ01000035
Bacillota
Streptococcus ruminantium DAT837 [BCEZ]
30177
30107
-
Cys
GCA
[ENA]
¡û
>W2010076011
BCFA01000030
Bacillota
Streptococcus ruminantium DTK284 [BCFA]
8447
8377
-
Cys
GCA
[ENA]
¡û
>W2010076056
BCFB01000058
Bacillota
Streptococcus ruminantium DTK366 [BCFB]
7877
7807
-
Cys
GCA
[ENA]
¡û
>W2010076080
BCFC01000044
Bacillota
Streptococcus ruminantium DTK285 [BCFC]
83266
83336
+
Cys
GCA
[ENA]
¡û
>W2010076134
BCFD01000016
Bacillota
Streptococcus ruminantium MO591 [BCFD]
83406
83476
+
Cys
GCA
[ENA]
¡û
>W2010076176
BCFE01000011
Bacillota
Streptococcus ruminantium DTK360 [BCFE]
85805
85875
+
Cys
GCA
[ENA]
¡û
>W2010076218
BCFF01000025
Bacillota
Streptococcus ruminantium DTK397 [BCFF]
69547
69617
+
Cys
GCA
[ENA]
¡û
>W2010076284
BCFG01000045
Bacillota
Streptococcus ruminantium DTK364 [BCFG]
157660
157730
+
Cys
GCA
[ENA]
¡û
>W2010076304
BCFH01000019
Bacillota
Streptococcus ruminantium DAT741 [BCFH]
28657
28727
+
Cys
GCA
[ENA]
¡û
>W2010076345
BCFI01000012
Bacillota
Streptococcus ruminantium DTK390 [BCFI]
72017
71947
-
Cys
GCA
[ENA]
¡û
>W2010145322
BLXU01000007
Bacillota
Lactococcus garvieae lg38 [BLXU]
115860
115790
-
Cys
GCA
[ENA]
¡û
>W2010259160
CABJEF020000001
Bacillota
Lactococcus garvieae [CABJEF]
137546
137476
-
Cys
GCA
[ENA]
¡û
>W2010632755
JABTTD010000001
Bacillota
Lactococcus petauri LZys1 [JABTTD]
259427
259357
-
Cys
GCA
[ENA]
¡û
>W2010762971
JXJV01000023
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
26791
26861
+
Cys
GCA
[ENA]
¡û
>W2010762988
JXJW01000001
Bacillota
Lactococcus piscium DSM 6634 [JXJW]
26502
26572
+
Cys
GCA
[ENA]
¡û
>W2010763031
JXJX01000002
Bacillota
Lactococcus plantarum DSM 20686 [JXJX]
57261
57191
-
Cys
GCA
[ENA]
¡û
>W2010786183
LTDA01000011
Bacillota
Lactococcus garvieae KS1546 [LTDA]
310569
310639
+
Cys
GCA
[ENA]
¡û
>W2011155531
OBKP01000005
Bacillota
Lactococcus piscium CMTALT17 [OBKP]
53792
53862
+
Cys
GCA
[ENA]
¡û
>W2011165230
OGVB01000034
Bacillota
Lactococcus piscium CMTALT02 [OGVB]
57231
57301
+
Cys
GCA
[ENA]
¡û
>W2011490925
RSFD01000030
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
64387
64457
+
Cys
GCA
[ENA]
¡û
>W2011543963
SDHG01000005
Bacillota
Lactococcus petauri DB43829 [SDHG]
69481
69551
+
Cys
GCA
[ENA]
¡û
>W2011544020
SDHH01000007
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
77524
77454
-
Cys
GCA
[ENA]
¡û
>W2011544045
SDHI01000001
Bacillota
Lactococcus petauri DB22928 [SDHI]
290204
290274
+
Cys
GCA
[ENA]
¡û
>W2011544092
SDHJ01000001
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
296312
296382
+
Cys
GCA
[ENA]
¡û
>W2011544142
SDHK01000001
Bacillota
Lactococcus petauri DB44798 [SDHK]
294057
294127
+
Cys
GCA
[ENA]
¡û
>W2011544204
SDHL01000001
Bacillota
Lactococcus petauri FISH1 [SDHL]
340635
340565
-
Cys
GCA
[ENA]
¡û
>W2011544243
SDHM01000001
Bacillota
Lactococcus petauri GRT2 [SDHM]
311022
311092
+
Cys
GCA
[ENA]
¡û
>W2011544296
SDHN01000001
Bacillota
Lactococcus garvieae CT2 [SDHN]
65876
65806
-
Cys
GCA
[ENA]
¡û
>W2011544335
SDHO01000001
Bacillota
Lactococcus garvieae FISHB [SDHO]
85087
85157
+
Cys
GCA
[ENA]
¡û
>W2011544445
SDHQ01000005
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
71678
71748
+
Cys
GCA
[ENA]
¡û
>W2011602721
SIVY01000027
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
231145
231075
-
Cys
GCA
[ENA]
¡û
>W2011602738
SIVY01000039
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
2470
2540
+
Cys
GCA
[ENA]
¡û
>W2012206256
VXKD01000004
Bacillota
Lactococcus garvieae subsp. garvieae CCUG 32208T [VXKD]
14559
14629
+
Cys
GCA
[ENA]
¡û
>W2110068658
BOVO01000004
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
35459
35529
+
Cys
GCA
[ENA]
¡û
>W2110068705
BOVP01000001
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
397303
397233
-
Cys
GCA
[ENA]
¡û
>W2110344949
JADMXE010000001
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
322493
322563
+
Cys
GCA
[ENA]
¡û
>W2110368976
JADPGL010000001
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
25744
25814
+
Cys
GCA
[ENA]
¡û
>W2110369578
JADPHA010000001
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
310723
310793
+
Cys
GCA
[ENA]
¡û
>W2110437306
JAEOAS010000001
Bacillota
Lactococcus petauri H10 [JAEOAS]
112721
112791
+
Cys
GCA
[ENA]
¡û
>W2110583506
JAGYWS010000002
Bacillota
Lactococcus piscium BF1 [JAGYWS]
50913
50843
-
Cys
GCA
[ENA]
¡û
>C211030508
CP017194
Bacillota
Lactococcus carnosus TMW 21612 [CP017194]
1629375
1629305
-
Cys
GCA
-
¡û
>C211210929
CP065637
Bacillota
Lactococcus garvieae FDAARGOS_929 [CP065637]
2029751
2029681
-
Cys
GCA
-
¡û
>C211212707
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
2063082
2063152
+
Cys
GCA
-
¡û
>C211219747
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
704488
704418
-
Cys
GCA
-
¡û
>C211221956
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
289783
289853
+
Cys
GCA
-
¡û
>C211289021
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
288441
288511
+
Cys
GCA
-
¡û
>C211289137
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
292824
292894
+
Cys
GCA
-
¡û
>C211289197
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
760773
760843
+
Cys
GCA
-
¡û
>C211289255
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
289251
289321
+
Cys
GCA
-
¡û
>C211408093
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
1284258
1284188
-
Cys
GCA
-
¡û
>C231011680
AP025332
Bacillota
Streptococcus ruminantium GUT-184 [AP025332]
1840875
1840945
+
Cys
GCA
-
¡û
>C231011732
AP025333
Bacillota
Streptococcus ruminantium GUT-189 [AP025333]
1854962
1855032
+
Cys
GCA
-
¡û
>C231024824
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
289048
289118
+
Cys
GCA
-
¡û
>C231034122
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
324135
324205
+
Cys
GCA
-
¡û
>W1510060226
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
878257
878187
-
Cys
GCA
[ENA]
¡û
>W1510060343
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
878257
878187
-
Cys
GCA
[ENA]
¡û
>C231227669
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
322792
322862
+
Cys
GCA
-
¡û
>C231227729
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
293034
293104
+
Cys
GCA
-
¡û
>C231230506
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
329921
329991
+
Cys
GCA
-
¡û
>W2110761222
QSNN01000007
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
256761
256831
+
Cys
GCA
[ENA]
¡û
>C231519380
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
330288
330358
+
Cys
GCA
-
¡û
>C231553149
CP113924
Bacillota
Streptococcaceae bacterium ESL0729 [CP113924]
1400915
1400985
+
Cys
GCA
-
¡û
>C231553583
CP113940
Bacillota
Streptococcaceae bacterium ESL0687 [CP113940]
1417631
1417701
+
Cys
GCA
-
¡û
>C231627982
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
420466
420536
+
Cys
GCA
-
¡û
>C241023289
CP019557
Bacillota
Streptococcus sp. DAT741 [CP019557]
1828392
1828462
+
Cys
GCA
-
¡û
>W2110783077
WIVG01000035
Bacillota
Lactococcus garvieae EP01 [WIVG]
21262
21332
+
Cys
GCA
[ENA]
¡û
>C241103661
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
292829
292899
+
Cys
GCA
-
¡û
>C241278482
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
322888
322958
+
Cys
GCA
-
¡û
>C11112742
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
298584
298654
+
Cys
GCA
[Ensembl]
¡û
>W1511314668
JPUJ01000003
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
112855
112925
+
Cys
GCA
[ENA]
¡û
>W11157431
AFCC01000002
Bacillota
Lactococcus garvieae 21881 [AFCC]
8690
8620
-
Cys
GCA
[ENA]
¡û
>W11157514
AFCD01000056
Bacillota
Lactococcus garvieae 8831 [AFCD]
28341
28411
+
Cys
GCA
[ENA]
¡û
>W11162779
AFHF01000021
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
9688
9618
-
Cys
GCA
[ENA]
¡û
>W121016395
AGQY01000024
Bacillota
Lactococcus garvieae LG9 [AGQY]
105
35
-
Cys
GCA
[ENA]
¡û
>W1610072960
BCVM01000017
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
18824
18894
+
Cys
GCA
[ENA]
¡û
>W1610514185
FLZT01000002
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
190113
190183
+
Cys
GCA
[ENA]
¡û
>W1610856892
LQOE01000074
Bacillota
Lactococcus sp. DD01 [LQOE]
57928
57858
-
Cys
GCA
[ENA]
¡û
>W1610869638
LQZE01000026
Bacillota
Streptococcus oralis [LQZE]
124
196
+
Cys
GCA
[ENA]
¡û
>W1611012220
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
305364
305434
+
Cys
GCA
[ENA]
¡û
>W1710070078
BCVM01000017
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
18824
18894
+
Cys
GCA
[ENA]
¡û
>W1710568195
FOTJ01000013
Bacillota
Lactococcus garvieae [FOTJ]
30911
30841
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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