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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.459479 (54 seq.)
>W1711078151
LSMO01000101
Gammaproteobacteria
Alcanivorax sp. Nap_24 [LSMO]
209
134
-
Glu
TTC
[ENA]
¡û
>W1711144386
LVIC01000009
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
42211
42136
-
Glu
TTC
[ENA]
¡û
>W1711144388
LVIC01000011
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
62624
62699
+
Glu
TTC
[ENA]
¡û
>W1711224009
LXTS01000509
Gammaproteobacteria
Alcanivorax sp. CP2C [LXTS]
10206
10281
+
Glu
TTC
[ENA]
¡û
>C171016534
CP012331
Gammaproteobacteria
Alloalcanivorax xenomutans P40 [CP012331]
1577049
1577124
+
Glu
TTC
-
¡û
>C171016564
CP012331
Gammaproteobacteria
Alloalcanivorax xenomutans P40 [CP012331]
2588676
2588601
-
Glu
TTC
-
¡û
>C171118500
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
119863
119938
+
Glu
TTC
-
¡û
>WENV181321559
OFKM01013982
[OFKM] marine metagenome; sea ice
118
193
+
Glu
TTC
[ENA]
¢þ
>WENV181323196
OFKW01028177
[OFKW] marine metagenome; sea ice
145
220
+
Glu
TTC
[ENA]
¢þ
>W141152575
AXBX01000010
Gammaproteobacteria
Alcanivorax sp. PN-3 [AXBX]
12977
13052
+
Glu
TTC
[ENA]
¡û
>W141152581
AXBX01000015
Gammaproteobacteria
Alcanivorax sp. PN-3 [AXBX]
36819
36744
-
Glu
TTC
[ENA]
¡û
>WENV182585669
OJHI01000391
[OJHI] seawater metagenome; Sea water
7013
6938
-
Glu
TTC
[ENA]
¢þ
>W141276033
JADM01000007
Gammaproteobacteria
Alcanivorax sp. 43B_GOM-46m [JADM]
136129
136054
-
Glu
TTC
[ENA]
¡û
>W141276038
JADM01000009
Gammaproteobacteria
Alcanivorax sp. 43B_GOM-46m [JADM]
81050
81125
+
Glu
TTC
[ENA]
¡û
>WENV183057506
OLHL01004613
[OLHL] seawater metagenome; Sea water
2746
2821
+
Glu
TTC
[ENA]
¢þ
>WENV183060620
OLHY01000779
[OLHY] seawater metagenome; Sea water
2552
2477
-
Glu
TTC
[ENA]
¢þ
>WENV183522305
OMOM01002574
[OMOM] seawater metagenome; Sea water
2281
2356
+
Glu
TTC
[ENA]
¢þ
>WENV170136640
CENV01057358
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1261
1186
-
Glu
TTC
[ENA]
¢þ
>WENV170578862
FUFK010037452
[FUFK] metagenome; unknown
57645
57720
+
Glu
TTC
[ENA]
¢þ
>WENV170581488
FUFK010064264
[FUFK] metagenome; unknown
38103
38028
-
Glu
TTC
[ENA]
¢þ
>WENV170584220
FUFK010199164
[FUFK] metagenome; unknown
2532
2607
+
Glu
TTC
[ENA]
¢þ
>WENV170592566
FUFK010810214
[FUFK] metagenome; unknown
19108
19183
+
Glu
TTC
[ENA]
¢þ
>WENV170669226
LAHR01049343
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
492
567
+
Glu
TTC
[ENA]
¢þ
>WENV170765507
LWDU01037674
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
46990
47065
+
Glu
TTC
[ENA]
¢þ
>WENV170821471
MDSY01022734
[MDSY] marine metagenome; seawater
201
126
-
Glu
TTC
[ENA]
¢þ
>WENV170851960
MDTA01140807
[MDTA] marine metagenome; seawater
77325
77400
+
Glu
TTC
[ENA]
¢þ
>WENV170854524
MDTA01189957
[MDTA] marine metagenome; seawater
27010
27085
+
Glu
TTC
[ENA]
¢þ
>WENV170903388
MDTD01201022
[MDTD] marine metagenome; seawater
77325
77400
+
Glu
TTC
[ENA]
¢þ
>WENV170914399
MDTE01147924
[MDTE] marine metagenome; seawater
1086
1011
-
Glu
TTC
[ENA]
¢þ
>WENV170941904
MDTG01368512
[MDTG] marine metagenome; seawater
4130
4205
+
Glu
TTC
[ENA]
¢þ
>WENV170962154
MRWF01007436
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
22067
22142
+
Glu
TTC
[ENA]
¢þ
>WENV170962383
MRWF01014110
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
29291
29366
+
Glu
TTC
[ENA]
¢þ
>WENV170962586
MRWF01021148
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
663516
663441
-
Glu
TTC
[ENA]
¢þ
>WENV170963089
MRWG01000010
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
374967
374892
-
Glu
TTC
[ENA]
¢þ
>WENV170964106
MRWG01003076
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
5
80
+
Glu
TTC
[ENA]
¢þ
>W1911071978
NMQZ01000048
Gammaproteobacteria
Alloalcanivorax mobilis MT13131 [NMQZ]
8768
8693
-
Glu
TTC
[ENA]
¡û
>W1911495070
OBMO01000012
Gammaproteobacteria
Alloalcanivorax xenomutans JC109 [OBMO]
110265
110190
-
Glu
TTC
[ENA]
¡û
>W1911495087
OBMO01000025
Gammaproteobacteria
Alloalcanivorax xenomutans JC109 [OBMO]
16497
16422
-
Glu
TTC
[ENA]
¡û
>W1810604658
QGMQ01000001
Gammaproteobacteria
Marinimicrobium alkaliphilum SW121 [QGMQ]
185348
185423
+
Glu
TTC
[ENA]
¡û
>W1810604660
QGMQ01000001
Gammaproteobacteria
Marinimicrobium alkaliphilum SW121 [QGMQ]
185563
185638
+
Glu
TTC
[ENA]
¡û
>W1810787865
QREA01000006
Gammaproteobacteria
Alcanivorax sp. EA2 [QREA]
209732
209657
-
Glu
TTC
[ENA]
¡û
>W1810787870
QREA01000008
Gammaproteobacteria
Alcanivorax sp. EA2 [QREA]
80300
80375
+
Glu
TTC
[ENA]
¡û
>W1610019390
ARXV01000001
Gammaproteobacteria
Alcanivorax nanhaiticus [ARXV]
28440
28365
-
Glu
TTC
[ENA]
¡û
>W1610109421
CZHF01000045
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
76272
76347
+
Glu
TTC
[ENA]
¡û
>W1610109434
CZHF01000054
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
712049
712124
+
Glu
TTC
[ENA]
¡û
>C131003653
CP003466
Gammaproteobacteria
Alloalcanivorax dieselolei B5 [CP003466]
1694978
1695053
+
Glu
TTC
[Ensembl]
¡û
>C131003683
CP003466
Gammaproteobacteria
Alloalcanivorax dieselolei B5 [CP003466]
2700115
2700040
-
Glu
TTC
[Ensembl]
¡û
>W1610917167
LSMO01000101
Gammaproteobacteria
Alcanivorax sp. Nap_24 [LSMO]
209
134
-
Glu
TTC
[ENA]
¡û
>W1610955394
LVIC01000009
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
42211
42136
-
Glu
TTC
[ENA]
¡û
>W1610955396
LVIC01000011
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
62624
62699
+
Glu
TTC
[ENA]
¡û
>W1611008380
LXTS01000509
Gammaproteobacteria
Alcanivorax sp. CP2C [LXTS]
10206
10281
+
Glu
TTC
[ENA]
¡û
>W1710016284
ARXV01000001
Gammaproteobacteria
Alcanivorax nanhaiticus [ARXV]
28440
28365
-
Glu
TTC
[ENA]
¡û
>W1710112125
CZHF01000045
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
76272
76347
+
Glu
TTC
[ENA]
¡û
>W1710112138
CZHF01000054
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
712049
712124
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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