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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45971 (35 seq.)
>W1711350368
MCRJ01000007
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
2426
2515
+
Ser
GGA
[ENA]
¡û
>W1711718107
MTHE01000004
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
148467
148378
-
Ser
GGA
[ENA]
¡û
>W1712106185
NIVP01000012
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
100463
100374
-
Ser
GGA
[ENA]
¡û
>W131218280
ATXN01000006
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
109750
109839
+
Ser
GGA
[ENA]
¡û
>WENV180014132
FPIC01062819
[FPIC] soil metagenome; Soil
91
2
-
Ser
GGA
[ENA]
¢þ
>W141042993
AMFA01000019
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
14319
14230
-
Ser
GGA
[ENA]
¡û
>WENV181227609
OFDN01021754
[OFDN] hot springs metagenome; Water
835
924
+
Ser
GGA
[ENA]
¢þ
>WENV181402426
OFTY01001415
[OFTY] sludge metagenome; sludge
10429
10518
+
Ser
GGA
[ENA]
¢þ
>WENV181732524
OGQD01047214
[OGQD] human gut metagenome; faeces
446
535
+
Ser
GGA
[ENA]
¢þ
>WENV183727501
PJTP01000007
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
436493
436404
-
Ser
GGA
[ENA]
¢þ
>WENV183728631
PJTQ01000202
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
46177
46088
-
Ser
GGA
[ENA]
¢þ
>WENV183730975
PJTS01002906
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
3581
3492
-
Ser
GGA
[ENA]
¢þ
>WENV183733527
PJTY01003616
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
2460
2371
-
Ser
GGA
[ENA]
¢þ
>WENV183735440
PJUB01000004
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
78046
77957
-
Ser
GGA
[ENA]
¢þ
>WENV183738939
PJUE01000542
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
10108
10019
-
Ser
GGA
[ENA]
¢þ
>WENV183740257
PJUF01000865
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1900
1989
+
Ser
GGA
[ENA]
¢þ
>WENV170657334
JTFO01127270
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
742
653
-
Ser
GGA
[ENA]
¢þ
>C181227383
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
4055990
4055901
-
Ser
GGA
-
¡û
>C191005663
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
312645
312556
-
Ser
GGA
-
¡û
>C191093985
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
493740
493829
+
Ser
GGA
-
¡û
>C191134455
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1472175
1472086
-
Ser
GGA
-
¡û
>C191157383
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1808371
1808460
+
Ser
GGA
-
¡û
>C191220429
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2449586
2449675
+
Ser
GGA
-
¡û
>W09133893
ACQR01000080
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
3889
3800
-
Ser
GGA
[ENA]
¡û
>W141551938
JHOF01000023
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
36581
36670
+
Ser
GGA
[ENA]
¡û
>W1910182671
BJNC01000003
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
160545
160634
+
Ser
GGA
[ENA]
¡û
>W1910374337
FUIE01000057
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
102827
102916
+
Ser
GGA
[ENA]
¡û
>W1911760361
QWTZ01000014
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
52555
52466
-
Ser
GGA
[ENA]
¡û
>W1810463977
PZZZ01000002
Alphaproteobacteria
Mycoplana dimorpha DSM 7138 [PZZZ]
195884
195973
+
Ser
GGA
[ENA]
¡û
>W1810503525
QBKE01000009
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
21598
21687
+
Ser
GGA
[ENA]
¡û
>W1810889096
QURN01000001
Alphaproteobacteria
Mesorhizobium denitrificans LA-28 [QURN]
359145
359056
-
Ser
GGA
[ENA]
¡û
>C11100716
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
127963
127874
-
Ser
GGA
[Ensembl]
¡û
>W11123411
ADUI01000023
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
6157
6246
+
Ser
GGA
[ENA]
¡û
>W1511596043
LBNT01000001
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
165662
165751
+
Ser
GGA
[ENA]
¡û
>C161089846
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
298506
298417
-
Ser
GGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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