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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.459846 (101 seq.)
>W1711069163
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
22222
22147
-
Gly
TCC
[ENA]
¡û
>W1711069208
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
200195
200270
+
Gly
TCC
[ENA]
¡û
>W1711167271
LVWE01000033
Bacteroidota
Polaribacter atrinae [LVWE]
28550
28475
-
Gly
TCC
[ENA]
¡û
>W1711167279
LVWE01000050
Bacteroidota
Polaribacter atrinae [LVWE]
198211
198286
+
Gly
TCC
[ENA]
¡û
>W1711621476
MPDD01000006
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G1 [MPDD]
40118
40193
+
Gly
TCC
[ENA]
¡û
>W1711621489
MPDD01000021
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G1 [MPDD]
40685
40610
-
Gly
TCC
[ENA]
¡û
>W1712097612
NIDK01000007
Bacteroidota
Polaribacter haliotis [NIDK]
26492
26417
-
Gly
TCC
[ENA]
¡û
>W1712097632
NIDL01000001
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
598778
598703
-
Gly
TCC
[ENA]
¡û
>W131109057
APHJ01000025
Bacteroidota
Gillisia sp. CAL575 [APHJ]
55429
55504
+
Gly
TCC
[ENA]
¡û
>W131109065
APHJ01000027
Bacteroidota
Gillisia sp. CAL575 [APHJ]
100088
100013
-
Gly
TCC
[ENA]
¡û
>W131175271
ARJD01000040
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
80764
80839
+
Gly
TCC
[ENA]
¡û
>W131175318
ARJD01000069
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
274510
274585
+
Gly
TCC
[ENA]
¡û
>W131233821
AUKH01000002
Bacteroidota
Gillisia sp. JM1 [AUKH]
563664
563739
+
Gly
TCC
[ENA]
¡û
>W131233835
AUKH01000005
Bacteroidota
Gillisia sp. JM1 [AUKH]
524107
524032
-
Gly
TCC
[ENA]
¡û
>C171063253
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1171978
1171903
-
Gly
TCC
-
¡û
>C171063270
CP017478
Bacteroidota
Urechidicola croceus LPB0138 [CP017478]
874548
874623
+
Gly
TCC
-
¡û
>C171094191
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
2421792
2421867
+
Gly
TCC
-
¡û
>C171098447
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
206310
206385
+
Gly
TCC
-
¡û
>w014178
AAOG01000002
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
275132
275207
+
Gly
TCC
[ENA]
¡û
>w013077
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
1081815
1081743
-
Gly
TCC
[ENA]
¡û
>WENV180356587
OBNL01000019
[OBNL] marine metagenome; ENVO:00002010
12568
12641
+
Gly
TCC
[ENA]
¢þ
>WENV180384518
OBOY01000800
[OBOY] marine metagenome; Sterile flask
319
392
+
Gly
TCC
[ENA]
¢þ
>WENV180639178
OCRI01171530
[OCRI] marine metagenome; Sterile flask
188
261
+
Gly
TCC
[ENA]
¢þ
>W08005624
ABIB01000007
Bacteroidota
Kordia algicida OT-1 [ABIB]
42963
43036
+
Gly
TCC
[ENA]
¡û
>WENV182547326
OJBS01000335
[OJBS] seawater metagenome; Sea water
10423
10350
-
Gly
TCC
[ENA]
¢þ
>WENV182547668
OJBT01000336
[OJBT] seawater metagenome; Sea water
2033
1960
-
Gly
TCC
[ENA]
¢þ
>WENV182549706
OJBY01010975
[OJBY] seawater metagenome; Sea water
163
88
-
Gly
TCC
[ENA]
¢þ
>WENV182555607
OJDC01004493
[OJDC] seawater metagenome; Sea water
1042
969
-
Gly
TCC
[ENA]
¢þ
>WENV182558660
OJDN01000209
[OJDN] seawater metagenome; Sea water
1645
1718
+
Gly
TCC
[ENA]
¢þ
>WENV182559426
OJDP01005320
[OJDP] seawater metagenome; Sea water
1105
1032
-
Gly
TCC
[ENA]
¢þ
>WENV182560346
OJDU01000035
[OJDU] seawater metagenome; Sea water
29543
29616
+
Gly
TCC
[ENA]
¢þ
>WENV182561554
OJDW01009288
[OJDW] seawater metagenome; Sea water
312
385
+
Gly
TCC
[ENA]
¢þ
>WENV182564414
OJEF01000056
[OJEF] seawater metagenome; Sea water
15754
15681
-
Gly
TCC
[ENA]
¢þ
>WENV182565514
OJEH01009677
[OJEH] seawater metagenome; Sea water
1078
1151
+
Gly
TCC
[ENA]
¢þ
>WENV182567425
OJEO01000730
[OJEO] seawater metagenome; Sea water
10619
10546
-
Gly
TCC
[ENA]
¢þ
>WENV182567796
OJEP01000266
[OJEP] seawater metagenome; Sea water
5863
5790
-
Gly
TCC
[ENA]
¢þ
>WENV182572759
OJFM01012153
[OJFM] seawater metagenome; Sea water
656
583
-
Gly
TCC
[ENA]
¢þ
>WENV182574511
OJFR01052033
[OJFR] seawater metagenome; Sea water
358
431
+
Gly
TCC
[ENA]
¢þ
>WENV182577552
OJGG01003432
[OJGG] seawater metagenome; Sea water
259
332
+
Gly
TCC
[ENA]
¢þ
>WENV182578643
OJGP01000002
[OJGP] seawater metagenome; Sea water
59036
58963
-
Gly
TCC
[ENA]
¢þ
>WENV182585213
OJHH01003625
[OJHH] seawater metagenome; Sea water
568
641
+
Gly
TCC
[ENA]
¢þ
>WENV182590793
OJIK01000636
[OJIK] seawater metagenome; Sea water
9803
9730
-
Gly
TCC
[ENA]
¢þ
>WENV182593011
OJIS01008186
[OJIS] seawater metagenome; Sea water
1860
1787
-
Gly
TCC
[ENA]
¢þ
>WENV182593240
OJIT01010993
[OJIT] seawater metagenome; Sea water
312
385
+
Gly
TCC
[ENA]
¢þ
>WENV183056059
OLHI01000002
[OLHI] seawater metagenome; Sea water
151673
151600
-
Gly
TCC
[ENA]
¢þ
>WENV183057782
OLHM01004531
[OLHM] seawater metagenome; Sea water
1607
1534
-
Gly
TCC
[ENA]
¢þ
>WENV183061146
OLHZ01000246
[OLHZ] seawater metagenome; Sea water
416
343
-
Gly
TCC
[ENA]
¢þ
>WENV183062515
OLID01029370
[OLID] seawater metagenome; Sea water
624
551
-
Gly
TCC
[ENA]
¢þ
>WENV183064728
OLII01000200
[OLII] seawater metagenome; Sea water
21972
22047
+
Gly
TCC
[ENA]
¢þ
>WENV183619369
OOFQ01002448
[OOFQ] marine metagenome; seawater
2270
2197
-
Gly
TCC
[ENA]
¢þ
>WENV183628299
OOGN01006658
[OOGN] marine metagenome; sea ice
1083
1156
+
Gly
TCC
[ENA]
¢þ
>WENV170619550
FUWD013016251
[FUWD] metagenome; unknown
479
404
-
Gly
TCC
[ENA]
¢þ
>WENV170620006
FUWD013024434
[FUWD] metagenome; unknown
1176
1251
+
Gly
TCC
[ENA]
¢þ
>WENV170626843
FUWD013229782
[FUWD] metagenome; unknown
6749
6824
+
Gly
TCC
[ENA]
¢þ
>WENV170627031
FUWD013230812
[FUWD] metagenome; unknown
76659
76734
+
Gly
TCC
[ENA]
¢þ
>WENV170627479
FUWD013232937
[FUWD] metagenome; unknown
8476
8401
-
Gly
TCC
[ENA]
¢þ
>WENV170627656
FUWD013234861
[FUWD] metagenome; unknown
479
404
-
Gly
TCC
[ENA]
¢þ
>WENV170781938
MAAC01004817
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
32
107
+
Gly
TCC
[ENA]
¢þ
>WENV170782059
MAAC01007651
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2434
2359
-
Gly
TCC
[ENA]
¢þ
>WENV170783278
MAAC01015566
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7420
7345
-
Gly
TCC
[ENA]
¢þ
>WENV170783289
MAAC01015608
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7379
7454
+
Gly
TCC
[ENA]
¢þ
>WENV170783428
MAAC01016802
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1777
1852
+
Gly
TCC
[ENA]
¢þ
>WENV170783476
MAAC01017361
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
88
13
-
Gly
TCC
[ENA]
¢þ
>WENV170823854
MDSY01065171
[MDSY] marine metagenome; seawater
2608
2533
-
Gly
TCC
[ENA]
¢þ
>C181113422
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
1486716
1486643
-
Gly
TCC
-
¡û
>W141563322
JHZX01000001
Bacteroidota
Sediminibacter sp. Hel_I_10 [JHZX]
3016190
3016265
+
Gly
TCC
[ENA]
¡û
>W141563401
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
2669375
2669450
+
Gly
TCC
[ENA]
¡û
>W141818600
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
420879
420954
+
Gly
TCC
[ENA]
¡û
>W141818611
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
1206281
1206356
+
Gly
TCC
[ENA]
¡û
>W1910785537
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
1568929
1569002
+
Gly
TCC
[ENA]
¡û
>W1910785552
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
1869997
1869924
-
Gly
TCC
[ENA]
¡û
>W1910796553
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1466715
1466788
+
Gly
TCC
[ENA]
¡û
>W1910796557
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1502709
1502636
-
Gly
TCC
[ENA]
¡û
>W1910796605
MSCM01000001
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
224024
224097
+
Gly
TCC
[ENA]
¡û
>W1910796619
MSCM01000001
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
521516
521443
-
Gly
TCC
[ENA]
¡û
>W1810173135
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
1916075
1916002
-
Gly
TCC
[ENA]
¡û
>W1810586305
QFFG01000003
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
281920
281847
-
Gly
TCC
[ENA]
¡û
>W1810756015
QPEJ01000014
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
94346
94273
-
Gly
TCC
[ENA]
¡û
>W1511296864
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1409136
1409211
+
Gly
TCC
[ENA]
¡û
>W1511297070
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
1336526
1336451
-
Gly
TCC
[ENA]
¡û
>W1511576827
LAQA01000020
Bacteroidota
Flavobacteriaceae bacterium ASP10-09a [LAQA]
63974
64049
+
Gly
TCC
[ENA]
¡û
>W1511594940
LBMG01000024
Bacteroidota
Kordia jejudonensis SSK3-3 [LBMG]
34541
34616
+
Gly
TCC
[ENA]
¡û
>W1511594946
LBMG01000041
Bacteroidota
Kordia jejudonensis SSK3-3 [LBMG]
20960
20885
-
Gly
TCC
[ENA]
¡û
>W1511694611
LGBR01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [LGBR]
85410
85335
-
Gly
TCC
[ENA]
¡û
>C161068685
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
507674
507749
+
Gly
TCC
[Ensembl]
¡û
>C161068694
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
1188101
1188176
+
Gly
TCC
[Ensembl]
¡û
>C161068695
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
1188211
1188286
+
Gly
TCC
[Ensembl]
¡û
>C161068696
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
1188321
1188396
+
Gly
TCC
[Ensembl]
¡û
>W121034535
AHKR01000011
Bacteroidota
Gillisia limnaea DSM 15749 [AHKR]
27137
27062
-
Gly
TCC
[ENA]
¡û
>W121063869
AJLT01000009
Bacteroidota
Gillisia marina CBA3202 [AJLT]
23408
23483
+
Gly
TCC
[ENA]
¡û
>W121063880
AJLT01000023
Bacteroidota
Gillisia marina CBA3202 [AJLT]
18304
18229
-
Gly
TCC
[ENA]
¡û
>C131013440
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
1075933
1075858
-
Gly
TCC
[Ensembl]
¡û
>W1610909691
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
22222
22147
-
Gly
TCC
[ENA]
¡û
>W1610909736
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
200195
200270
+
Gly
TCC
[ENA]
¡û
>W1610977602
LVWE01000033
Bacteroidota
Polaribacter atrinae [LVWE]
28550
28475
-
Gly
TCC
[ENA]
¡û
>W1610977610
LVWE01000050
Bacteroidota
Polaribacter atrinae [LVWE]
198211
198286
+
Gly
TCC
[ENA]
¡û
>W1710537999
FNUE01000002
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
1183871
1183796
-
Gly
TCC
[ENA]
¡û
>W1710586999
FQXQ01000003
Bacteroidota
Wenyingzhuangia marina [FQXQ]
264437
264362
-
Gly
TCC
[ENA]
¡û
>W1710587000
FQXQ01000003
Bacteroidota
Wenyingzhuangia marina [FQXQ]
264327
264252
-
Gly
TCC
[ENA]
¡û
>W1710587001
FQXQ01000003
Bacteroidota
Wenyingzhuangia marina [FQXQ]
264217
264142
-
Gly
TCC
[ENA]
¡û
>W1710587007
FQXQ01000004
Bacteroidota
Wenyingzhuangia marina [FQXQ]
80532
80607
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK