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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.459980 (28 seq.)
>W131158412
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
75368
75442
+
Val
GAC
[ENA]
¡û
>W131158415
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
82044
82118
+
Val
GAC
[ENA]
¡û
>WENV180113774
OAPR01021685
[OAPR] marine metagenome; seawater
394
466
+
Val
GAC
[ENA]
¢þ
>WENV180357501
OBNN01018961
[OBNN] marine metagenome; Coastal water
208
280
+
Val
GAC
[ENA]
¢þ
>WENV181368410
OFQL01003425
[OFQL] freshwater metagenome; Freshwater Lake
664
736
+
Val
GAC
[ENA]
¢þ
>WENV181369715
OFQP01026775
[OFQP] freshwater metagenome; Freshwater Lake
401
473
+
Val
GAC
[ENA]
¢þ
>WENV181370659
OFQT01002273
[OFQT] freshwater metagenome; Freshwater Lake
338
266
-
Val
GAC
[ENA]
¢þ
>WENV181384263
OFRH01047653
[OFRH] wastewater metagenome; Exp Tend NO 100WW
185
113
-
Val
GAC
[ENA]
¢þ
>WENV181395787
OFSB01003493
[OFSB] freshwater metagenome; Freshwater Lake
569
497
-
Val
GAC
[ENA]
¢þ
>WENV181836298
OGVJ01003827
[OGVJ] freshwater metagenome; freshwater
826
754
-
Val
GAC
[ENA]
¢þ
>WENV181836587
OGVJ01013146
[OGVJ] freshwater metagenome; freshwater
110
182
+
Val
GAC
[ENA]
¢þ
>WENV181843258
OGVU01005305
[OGVU] freshwater metagenome; freshwater
460
532
+
Val
GAC
[ENA]
¢þ
>WENV181851165
OGWE01011399
[OGWE] freshwater metagenome; freshwater
324
252
-
Val
GAC
[ENA]
¢þ
>WENV181855737
OGWM01001122
[OGWM] freshwater metagenome; freshwater
1303
1231
-
Val
GAC
[ENA]
¢þ
>WENV181855817
OGWM01002323
[OGWM] freshwater metagenome; freshwater
2438
2366
-
Val
GAC
[ENA]
¢þ
>WENV181856100
OGWM01019301
[OGWM] freshwater metagenome; freshwater
455
383
-
Val
GAC
[ENA]
¢þ
>WENV181857068
OGWN01047304
[OGWN] freshwater metagenome; freshwater
300
372
+
Val
GAC
[ENA]
¢þ
>WENV170645481
JNSK01000003
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2572
2646
+
Val
GAC
[ENA]
¢þ
>WENV170645495
JNSK01000015
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
56055
55983
-
Val
GAC
[ENA]
¢þ
>WENV170645501
JNSK01000020
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
47841
47915
+
Val
GAC
[ENA]
¢þ
>WENV170645515
JNSK01000041
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
24808
24736
-
Val
GAC
[ENA]
¢þ
>WENV170645572
JNSK01000190
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8
80
+
Val
GAC
[ENA]
¢þ
>C181018668
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
811045
810973
-
Val
GAC
-
¡û
>C181018702
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
933755
933683
-
Val
GAC
-
¡û
>C181020958
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
752160
752232
+
Val
GAC
-
¡û
>C181020994
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
742240
742312
+
Val
GAC
-
¡û
>C181021030
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
713501
713573
+
Val
GAC
-
¡û
>C181021292
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
690504
690576
+
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK