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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460330 (17 seq.)
>W1711178874
LWHC01000084
Cyanobacteriota
Cyanobacterium sp. IPPAS B-1200 [LWHC]
3940
3868
-
Ala
GGC
[ENA]
¡û
>W08009377
ABOY01000025
Cyanobacteriota
Gloeothece citriformis PCC 7424 [ABOY]
49904
49832
-
Ala
GGC
[ENA]
¡û
>W08011357
ABVE01000004
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
172129
172057
-
Ala
GGC
[ENA]
¡û
>WENV182592657
OJIR01007793
[OJIR] seawater metagenome; Sea water
1293
1220
-
Ala
GGC
[ENA]
¢þ
>WENV170233096
CEQI01211477
[CEQI] marine metagenome genome assembly TARA_076_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
15062
14990
-
Ala
GGC
[ENA]
¢þ
>WENV170234037
CEQJ01115670
[CEQJ] marine metagenome genome assembly TARA_076_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1393
1321
-
Ala
GGC
[ENA]
¢þ
>WENV170291404
CESA01125232
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
47797
47725
-
Ala
GGC
[ENA]
¢þ
>WENV170335954
CESZ01109704
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
461
389
-
Ala
GGC
[ENA]
¢þ
>WENV170826959
MDSY01120108
[MDSY] marine metagenome; seawater
47885
47813
-
Ala
GGC
[ENA]
¢þ
>C181108412
CP024912
Cyanobacteriota
Cyanobacterium sp. HL-69 [CP024912]
494323
494251
-
Ala
GGC
-
¡û
>C09103538
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
1716121
1716193
+
Ala
GGC
[Ensembl]
¡û
>W1810069192
PEBC01000055
Cyanobacteriota
Cyanobacterium aponinum B-1201 [PEBC]
257
185
-
Ala
GGC
[ENA]
¡û
>C10114715
CP001842
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa isolate ALOHA [CP001842]
1341127
1341055
-
Ala
GGC
[Ensembl]
¡û
>C11106730
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
5885602
5885674
+
Ala
GGC
[Ensembl]
¡û
>C11106774
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
5885602
5885674
+
Ala
GGC
[Ensembl]
¡û
>C131010203
CP003940
Cyanobacteriota
Cyanobacterium stanieri PCC 7202 [CP003940]
324736
324664
-
Ala
GGC
[Ensembl]
¡û
>C131010506
CP003947
Cyanobacteriota
Cyanobacterium aponinum PCC 10605 [CP003947]
1122055
1121983
-
Ala
GGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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