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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460633 (41 seq.)
>W131155037
AQOB01000002
Bacillota
Butyricicoccus pullicaecorum 1.2 [AQOB]
2731
2806
+
Asn
GTT
[ENA]
¡û
>W131155072
AQOB01000012
Bacillota
Butyricicoccus pullicaecorum 1.2 [AQOB]
33971
33896
-
Asn
GTT
[ENA]
¡û
>W1712040542
NFKK01000023
Bacillota
Butyricicoccus pullicaecorum [NFKK]
79
154
+
Asn
GTT
[ENA]
¡û
>WENV180094368
MTBK01003969
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
94
19
-
Asn
GTT
[ENA]
¢þ
>WENV180096346
MTBK01125043
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
601
526
-
Asn
GTT
[ENA]
¢þ
>WENV180340048
OBLI01012814
[OBLI] pig gut metagenome; faeces
4088
4163
+
Asn
GTT
[ENA]
¢þ
>WENV180466627
OBYG01003486
[OBYG] human gut metagenome; faeces
3959
4034
+
Asn
GTT
[ENA]
¢þ
>WENV180622802
OCQC01186912
[OCQC] human gut metagenome; human gut
109
34
-
Asn
GTT
[ENA]
¢þ
>W141088590
AUVG01000049
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
139
214
+
Asn
GTT
[ENA]
¡û
>WENV181199052
OERG01000150
[OERG] metagenome; Caecal content
15949
15874
-
Asn
GTT
[ENA]
¢þ
>WENV181199884
OERI01016594
[OERI] metagenome; Caecal content
653
578
-
Asn
GTT
[ENA]
¢þ
>WENV181304089
OFHW01000404
[OFHW] metagenome; Caecal content
902
977
+
Asn
GTT
[ENA]
¢þ
>WENV181344681
OFMK01002321
[OFMK] human gut metagenome; human gut
4417
4342
-
Asn
GTT
[ENA]
¢þ
>WENV181512597
OGGT01025053
[OGGT] metagenome; Human gut stool
373
298
-
Asn
GTT
[ENA]
¢þ
>WENV181609618
OGLN01084983
[OGLN] metagenome; Human gut stool
131
56
-
Asn
GTT
[ENA]
¢þ
>WENV181820947
OGUD01003026
[OGUD] metagenome; Human gut stool
1379
1304
-
Asn
GTT
[ENA]
¢þ
>WENV182320252
OHYH01037934
[OHYH] human gut metagenome; feces
563
488
-
Asn
GTT
[ENA]
¢þ
>WENV182321627
OHYM01002955
[OHYM] human gut metagenome; feces
797
722
-
Asn
GTT
[ENA]
¢þ
>WENV183018570
OLEZ01006705
[OLEZ] human gut metagenome; human gut
121
46
-
Asn
GTT
[ENA]
¢þ
>WENV183324760
OLVY01048595
[OLVY] human gut metagenome; feces
644
719
+
Asn
GTT
[ENA]
¢þ
>WENV170003353
AGTN01307380
[AGTN] bioreactor metagenome; poplar biomass
483
408
-
Asn
GTT
[ENA]
¢þ
>WENV170685114
LFRM01073348
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
25439
25364
-
Asn
GTT
[ENA]
¢þ
>WENV170689982
LFRM01320210
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
29173
29098
-
Asn
GTT
[ENA]
¢þ
>WENV170691230
LFRM01387707
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1
76
+
Asn
GTT
[ENA]
¢þ
>W141731916
JNJN01000051
Bacillota
Agathobaculum desmolans ATCC 43058 [JNJN]
20864
20939
+
Asn
GTT
[ENA]
¡û
>W1910282608
FRDE01000004
Bacillota
Butyricicoccus pullicaecorum [FRDE]
336
411
+
Asn
GTT
[ENA]
¡û
>W1910282647
FRDE01000013
Bacillota
Butyricicoccus pullicaecorum [FRDE]
628
703
+
Asn
GTT
[ENA]
¡û
>C161076020
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
832624
832699
+
Asn
GTT
[Ensembl]
¡û
>C161076048
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
2370751
2370676
-
Asn
GTT
[Ensembl]
¡û
>C161076069
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
845264
845339
+
Asn
GTT
[Ensembl]
¡û
>C161076096
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
2463966
2463891
-
Asn
GTT
[Ensembl]
¡û
>W1610043714
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
158002
158077
+
Asn
GTT
[ENA]
¡û
>C131011037
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
835948
836023
+
Asn
GTT
-
¡û
>C131011064
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
2303264
2303189
-
Asn
GTT
-
¡û
>C131011903
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
835838
835913
+
Asn
GTT
-
¡û
>C131011930
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2307521
2307446
-
Asn
GTT
-
¡û
>W1610605793
LFSH01000020
Bacillota
Clostridiales bacterium DTU070 [LFSH]
25439
25364
-
Asn
GTT
[ENA]
¡û
>W1610605823
LFSH01000078
Bacillota
Clostridiales bacterium DTU070 [LFSH]
29173
29098
-
Asn
GTT
[ENA]
¡û
>W1710040874
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
158002
158077
+
Asn
GTT
[ENA]
¡û
>W1710727080
LFSH01000020
Bacillota
Clostridiales bacterium DTU070 [LFSH]
25439
25364
-
Asn
GTT
[ENA]
¡û
>W1710727110
LFSH01000078
Bacillota
Clostridiales bacterium DTU070 [LFSH]
29173
29098
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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