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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460669 (35 seq.)
>W1711223303
LXSU01000085
Campylobacterota
Campylobacter ornithocola WBE38 [LXSU]
21392
21467
+
Val
GAC
[ENA]
¡û
>W1711476652
MJVW01000003
Campylobacterota
Campylobacter lari [MJVW]
21272
21347
+
Val
GAC
[ENA]
¡û
>W1711476715
MJVX01000017
Campylobacterota
Campylobacter lari [MJVX]
21379
21454
+
Val
GAC
[ENA]
¡û
>W1711477287
MJWK01000008
Campylobacterota
Campylobacter lari [MJWK]
123765
123690
-
Val
GAC
[ENA]
¡û
>W1712043058
NFMK01000006
Campylobacterota
Campylobacter jejuni [NFMK]
312883
312808
-
Val
GAC
[ENA]
¡û
>W1712043124
NFMM01000024
Campylobacterota
Campylobacter jejuni [NFMM]
21250
21325
+
Val
GAC
[ENA]
¡û
>W1712043787
NFNE01000005
Campylobacterota
Campylobacter jejuni [NFNE]
915036
915111
+
Val
GAC
[ENA]
¡û
>W1712044710
NFOE01000013
Campylobacterota
Campylobacter jejuni [NFOE]
55690
55615
-
Val
GAC
[ENA]
¡û
>WENV180116907
OARB01000039
[OARB] human gut metagenome; ENVO:feces
12728
12653
-
Val
GAC
[ENA]
¢þ
>WENV180117097
OARC01023437
[OARC] human gut metagenome; ENVO:feces
82
157
+
Val
GAC
[ENA]
¢þ
>WENV180117907
OARM01001392
[OARM] human gut metagenome; ENVO:feces
18
93
+
Val
GAC
[ENA]
¢þ
>w005249
AAFK01000005
Campylobacterota
Campylobacter lari RM2100 [AAFK]
113959
114034
+
Val
GAC
[ENA]
¡û
>WENV180229073
OBCH01000083
[OBCH] human gut metagenome; human gut
24357
24432
+
Val
GAC
[ENA]
¢þ
>WENV180229757
OBCI01034786
[OBCI] human gut metagenome; human gut
201
126
-
Val
GAC
[ENA]
¢þ
>WENV180562534
OCLB01014680
[OCLB] human gut metagenome; human gut
602
677
+
Val
GAC
[ENA]
¢þ
>WENV180567408
OCLL01036759
[OCLL] human gut metagenome; human gut
298
373
+
Val
GAC
[ENA]
¢þ
>WENV183647529
OQVS01001135
[OQVS] human gut metagenome; human gut
16183
16258
+
Val
GAC
[ENA]
¢þ
>WENV183652166
OQVU01019667
[OQVU] human gut metagenome; human gut
1287
1212
-
Val
GAC
[ENA]
¢þ
>WENV183657437
OQWI01011848
[OQWI] human gut metagenome; human gut
1527
1602
+
Val
GAC
[ENA]
¢þ
>C191153600
CP037746
Campylobacterota
Campylobacter volucris 2014D-0083 [CP037746]
30590
30515
-
Val
GAC
-
¡û
>C191213220
LR134508
Campylobacterota
Campylobacter lari NCTC11937 [LR134508]
1534299
1534374
+
Val
GAC
-
¡û
>C09103390
CP000932
Campylobacterota
Campylobacter lari RM2100 RM2100; ATCC BAA-1060D [CP000932]
1523383
1523458
+
Val
GAC
[Ensembl]
¡û
>W1911200180
NREN01000009
Campylobacterota
Campylobacter sp. P255 [NREN]
51789
51714
-
Val
GAC
[ENA]
¡û
>C151034032
CP007766
Campylobacterota
Campylobacter peloridis LMG 23910 [CP007766]
1709307
1709382
+
Val
GAC
[Ensembl]
¡û
>C151034076
CP007769
Campylobacterota
Campylobacter sp. RM16704 [CP007769]
1551352
1551427
+
Val
GAC
[Ensembl]
¡û
>C151034163
CP007771
Campylobacterota
Campylobacter lari subsp. concheus LMG 11760 [CP007771]
1483397
1483472
+
Val
GAC
[Ensembl]
¡û
>C151034209
CP007772
Campylobacterota
Campylobacter subantarcticus LMG 24374 [CP007772]
1772527
1772602
+
Val
GAC
[Ensembl]
¡û
>C151034255
CP007773
Campylobacterota
Campylobacter subantarcticus LMG 24377 [CP007773]
1846675
1846750
+
Val
GAC
[Ensembl]
¡û
>C151034298
CP007774
Campylobacterota
Campylobacter volucris LMG 24379 [CP007774]
1514222
1514297
+
Val
GAC
[Ensembl]
¡û
>C151034344
CP007775
Campylobacterota
Campylobacter lari NCTC 11845 [CP007775]
1789434
1789509
+
Val
GAC
[Ensembl]
¡û
>C151034390
CP007776
Campylobacterota
Campylobacter lari CCUG 22395 [CP007776]
1513977
1514052
+
Val
GAC
[Ensembl]
¡û
>C151034433
CP007777
Campylobacterota
Campylobacter lari RM16701 [CP007777]
1514380
1514455
+
Val
GAC
[Ensembl]
¡û
>C151034476
CP007778
Campylobacterota
Campylobacter lari RM16712 [CP007778]
1550861
1550936
+
Val
GAC
[Ensembl]
¡û
>C151081741
CP011372
Campylobacterota
Campylobacter lari Slaughter Beach [CP011372]
1552311
1552386
+
Val
GAC
[Ensembl]
¡û
>W1710553066
FOHH01000003
Campylobacterota
Campylobacter lari subsp. lari [FOHH]
124580
124505
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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