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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460845 (76 seq.)
>W131174703
ARIR01000004
Bacteroidota
Prevotella veroralis DSM 19559 [ARIR]
3972
4046
+
Glu
CTC
[ENA]
¡û
>W131174704
ARIR01000004
Bacteroidota
Prevotella veroralis DSM 19559 [ARIR]
4077
4149
+
Glu
CTC
[ENA]
¡û
>WENV180007843
FLSB01000291
[FLSB] metagenome; saliva
16824
16750
-
Glu
CTC
[ENA]
¢þ
>WENV180007844
FLSB01000291
[FLSB] metagenome; saliva
16719
16647
-
Glu
CTC
[ENA]
¢þ
>WENV180008245
FLSB01008432
[FLSB] metagenome; saliva
11849
11777
-
Glu
CTC
[ENA]
¢þ
>WENV180008246
FLSB01008432
[FLSB] metagenome; saliva
11747
11675
-
Glu
CTC
[ENA]
¢þ
>WENV180008251
FLSB01008724
[FLSB] metagenome; saliva
939
867
-
Glu
CTC
[ENA]
¢þ
>WENV180008252
FLSB01008724
[FLSB] metagenome; saliva
834
760
-
Glu
CTC
[ENA]
¢þ
>WENV180009400
FLSC01002578
[FLSC] metagenome; saliva
10627
10699
+
Glu
CTC
[ENA]
¢þ
>WENV180009401
FLSC01002578
[FLSC] metagenome; saliva
10729
10801
+
Glu
CTC
[ENA]
¢þ
>WENV180011590
FLSK01006455
[FLSK] metagenome; saliva
3012
3084
+
Glu
CTC
[ENA]
¢þ
>WENV180011591
FLSK01006455
[FLSK] metagenome; saliva
3114
3186
+
Glu
CTC
[ENA]
¢þ
>WENV180707875
ODFJ01000071
[ODFJ] human metagenome; G_DNA_Tongue dorsum
85
157
+
Glu
CTC
[ENA]
¢þ
>WENV180708384
ODFJ01001287
[ODFJ] human metagenome; G_DNA_Tongue dorsum
76
4
-
Glu
CTC
[ENA]
¢þ
>WENV180708593
ODFJ01003481
[ODFJ] human metagenome; G_DNA_Tongue dorsum
6331
6259
-
Glu
CTC
[ENA]
¢þ
>WENV180724190
ODGR01000171
[ODGR] human metagenome; G_DNA_Tongue dorsum
57643
57571
-
Glu
CTC
[ENA]
¢þ
>WENV180725414
ODGR01086225
[ODGR] human metagenome; G_DNA_Tongue dorsum
125
197
+
Glu
CTC
[ENA]
¢þ
>WENV180757649
ODHW01000972
[ODHW] human metagenome; G_DNA_Tongue dorsum
18179
18251
+
Glu
CTC
[ENA]
¢þ
>WENV180758060
ODHW01005506
[ODHW] human metagenome; G_DNA_Tongue dorsum
1
73
+
Glu
CTC
[ENA]
¢þ
>WENV180773148
ODII01018071
[ODII] human metagenome; G_DNA_Buccal mucosa
61
133
+
Glu
CTC
[ENA]
¢þ
>WENV180794336
ODIZ01000192
[ODIZ] human metagenome; G_DNA_Tongue dorsum
85
157
+
Glu
CTC
[ENA]
¢þ
>WENV180795085
ODIZ01025819
[ODIZ] human metagenome; G_DNA_Tongue dorsum
795
721
-
Glu
CTC
[ENA]
¢þ
>WENV180795419
ODIZ01176054
[ODIZ] human metagenome; G_DNA_Tongue dorsum
76
4
-
Glu
CTC
[ENA]
¢þ
>WENV180816974
ODJP01135503
[ODJP] human metagenome; G_DNA_Tongue dorsum
75
3
-
Glu
CTC
[ENA]
¢þ
>WENV180821149
ODJS01000937
[ODJS] human metagenome; G_DNA_Tongue dorsum
73
1
-
Glu
CTC
[ENA]
¢þ
>WENV180860724
ODLE01000065
[ODLE] human metagenome; G_DNA_Tongue dorsum
62154
62226
+
Glu
CTC
[ENA]
¢þ
>WENV180874426
ODLQ01000545
[ODLQ] human metagenome; G_DNA_Tongue dorsum
15740
15812
+
Glu
CTC
[ENA]
¢þ
>WENV180875456
ODLQ01167388
[ODLQ] human metagenome; G_DNA_Tongue dorsum
1
73
+
Glu
CTC
[ENA]
¢þ
>WENV180879055
ODLZ01000023
[ODLZ] human metagenome; G_DNA_Tongue dorsum
898
972
+
Glu
CTC
[ENA]
¢þ
>WENV180879056
ODLZ01000023
[ODLZ] human metagenome; G_DNA_Tongue dorsum
1003
1075
+
Glu
CTC
[ENA]
¢þ
>WENV180884040
ODMC01033463
[ODMC] human metagenome; G_DNA_Tongue dorsum
969
897
-
Glu
CTC
[ENA]
¢þ
>WENV180884041
ODMC01033463
[ODMC] human metagenome; G_DNA_Tongue dorsum
864
790
-
Glu
CTC
[ENA]
¢þ
>WENV180884513
ODMC01178733
[ODMC] human metagenome; G_DNA_Tongue dorsum
2
74
+
Glu
CTC
[ENA]
¢þ
>WENV180890022
ODMO01000007
[ODMO] human metagenome; G_DNA_Tongue dorsum
170534
170608
+
Glu
CTC
[ENA]
¢þ
>WENV180890124
ODMO01000099
[ODMO] human metagenome; G_DNA_Tongue dorsum
2
74
+
Glu
CTC
[ENA]
¢þ
>WENV180890277
ODMO01000552
[ODMO] human metagenome; G_DNA_Tongue dorsum
160
86
-
Glu
CTC
[ENA]
¢þ
>WENV180920812
ODTH01025511
[ODTH] human metagenome; G_DNA_Tongue dorsum
88
162
+
Glu
CTC
[ENA]
¢þ
>WENV180942929
ODUA01000265
[ODUA] human metagenome; G_DNA_Posterior fornix
240
168
-
Glu
CTC
[ENA]
¢þ
>WENV180959110
ODUM01000074
[ODUM] human metagenome; G_DNA_Tongue dorsum
83
155
+
Glu
CTC
[ENA]
¢þ
>WENV180959612
ODUM01001683
[ODUM] human metagenome; G_DNA_Tongue dorsum
75
3
-
Glu
CTC
[ENA]
¢þ
>WENV181017646
ODWR01205079
[ODWR] human metagenome; G_DNA_Tongue dorsum
2
74
+
Glu
CTC
[ENA]
¢þ
>WENV181040912
ODXS01002118
[ODXS] human metagenome; G_DNA_Tongue dorsum
83
155
+
Glu
CTC
[ENA]
¢þ
>WENV181064352
ODYP01022318
[ODYP] human metagenome; G_DNA_Supragingival plaque
754
682
-
Glu
CTC
[ENA]
¢þ
>WENV181064353
ODYP01022318
[ODYP] human metagenome; G_DNA_Supragingival plaque
649
577
-
Glu
CTC
[ENA]
¢þ
>WENV181103856
OECV01006554
[OECV] human metagenome; G_DNA_Throat
1569
1641
+
Glu
CTC
[ENA]
¢þ
>WENV181104663
OEED01000030
[OEED] human metagenome; G_DNA_Tongue dorsum
11929
12001
+
Glu
CTC
[ENA]
¢þ
>WENV181104879
OEED01000349
[OEED] human metagenome; G_DNA_Tongue dorsum
10573
10645
+
Glu
CTC
[ENA]
¢þ
>WENV181130220
OEFY01002959
[OEFY] human metagenome; G_DNA_Throat
3533
3607
+
Glu
CTC
[ENA]
¢þ
>WENV181176642
OEJR01017675
[OEJR] human metagenome; G_DNA_Saliva
41
113
+
Glu
CTC
[ENA]
¢þ
>WENV181176643
OEJR01017675
[OEJR] human metagenome; G_DNA_Saliva
146
220
+
Glu
CTC
[ENA]
¢þ
>WENV181998137
OHAU01022080
[OHAU] human gut metagenome; faeces
96
168
+
Glu
CTC
[ENA]
¢þ
>WENV182008775
OHBJ01003541
[OHBJ] human gut metagenome; faeces
10253
10179
-
Glu
CTC
[ENA]
¢þ
>W141224666
BAIP01000045
Bacteroidota
Prevotella veroralis JCM 6290 [BAIP]
121
47
-
Glu
CTC
[ENA]
¡û
>W141225429
BAJG01000003
Bacteroidota
Prevotella denticola JCM 13449 [BAJG]
133578
133653
+
Glu
CTC
[ENA]
¡û
>W141225430
BAJG01000003
Bacteroidota
Prevotella denticola JCM 13449 [BAJG]
133682
133754
+
Glu
CTC
[ENA]
¡û
>W141226225
BAJX01000001
Bacteroidota
Prevotella histicola JCM 15637 = DNF00424 [BAJX]
39691
39617
-
Glu
CTC
[ENA]
¡û
>W141226226
BAJX01000001
Bacteroidota
Prevotella histicola JCM 15637 = DNF00424 [BAJX]
39590
39516
-
Glu
CTC
[ENA]
¡û
>W141226921
BAKP01000022
Bacteroidota
Prevotella scopos JCM 17725 [BAKP]
44882
44808
-
Glu
CTC
[ENA]
¡û
>W141226933
BAKP01000036
Bacteroidota
Prevotella scopos JCM 17725 [BAKP]
140
66
-
Glu
CTC
[ENA]
¡û
>WENV183003057
OLCQ01018566
[OLCQ] human gut metagenome; human gut
191
119
-
Glu
CTC
[ENA]
¢þ
>WENV183364222
OLXM01006047
[OLXM] human gut metagenome; feces
1604
1530
-
Glu
CTC
[ENA]
¢þ
>WENV170657919
JTFP01033379
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
325
251
-
Glu
CTC
[ENA]
¢þ
>WENV170658656
JTFP01173904
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
262
334
+
Glu
CTC
[ENA]
¢þ
>C181056014
CP022041
Bacteroidota
Prevotella melaninogenica FDAARGOS_306 [CP022040, CP022041]
1007616
1007690
+
Glu
CTC
-
¡û
>W09134422
ACSI01000013
Bacteroidota
Prevotella melaninogenica ATCC 25845 [ACSI]
174161
174087
-
Glu
CTC
[ENA]
¡û
>W09134831
ACVA01000061
Bacteroidota
Prevotella veroralis F0319 [ACVA]
15045
15119
+
Glu
CTC
[ENA]
¡û
>W09134832
ACVA01000061
Bacteroidota
Prevotella veroralis F0319 [ACVA]
15150
15222
+
Glu
CTC
[ENA]
¡û
>C11116983
CP002589
Bacteroidota
Prevotella denticola F0289 [CP002589]
83818
83890
+
Glu
CTC
[Ensembl]
¡û
>C11116984
CP002589
Bacteroidota
Prevotella denticola F0289 [CP002589]
83922
83994
+
Glu
CTC
[Ensembl]
¡û
>W1511351583
JRNJ01000081
Bacteroidota
Prevotella histicola JCM 15637 = DNF00424 [JRNJ]
63924
63850
-
Glu
CTC
[ENA]
¡û
>W1511351584
JRNJ01000081
Bacteroidota
Prevotella histicola JCM 15637 = DNF00424 [JRNJ]
63822
63748
-
Glu
CTC
[ENA]
¡û
>W1511351698
JRNM01000012
Bacteroidota
Prevotella bivia DNF00650 [JRNM]
140
66
-
Glu
CTC
[ENA]
¡û
>C161095008
CP016205
Bacteroidota
Prevotella scopos JCM 17725 W2052 [CP016204, CP016205]
1271594
1271668
+
Glu
CTC
-
¡û
>C161095009
CP016205
Bacteroidota
Prevotella scopos JCM 17725 W2052 [CP016204, CP016205]
1271697
1271771
+
Glu
CTC
-
¡û
>W121006858
AFXP01000004
Bacteroidota
Prevotella histicola F0411 [AFXP]
56693
56767
+
Glu
CTC
[ENA]
¡û
>W121069913
AJVZ01000004
Bacteroidota
Prevotella bivia DSM 20514 [AJVZ]
235028
235102
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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