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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460893 (45 seq.)
>W131108942
APGP01000044
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
59488
59413
-
Thr
TGT
[ENA]
¡û
>W131218301
ATXO01000007
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
43511
43436
-
Thr
TGT
[ENA]
¡û
>C006891
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
605662
605737
+
Thr
TGT
[Ensembl]
¡û
>WENV180014265
FPIC01124746
[FPIC] soil metagenome; Soil
333
408
+
Thr
TGT
[ENA]
¢þ
>WENV181226092
OFDK01000031
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
52101
52176
+
Thr
TGT
[ENA]
¢þ
>WENV181285367
OFGS01000054
[OFGS] hot springs metagenome; Water and soil
14543
14618
+
Thr
TGT
[ENA]
¢þ
>WENV181408500
OGCH01004143
[OGCH] hot springs metagenome; hot springs
2300
2375
+
Thr
TGT
[ENA]
¢þ
>W09113832
ABYZ01000014
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
26528
26453
-
Thr
TGT
[ENA]
¡û
>C191131119
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2538996
2538921
-
Thr
TGT
-
¡û
>C09100839
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2735369
2735294
-
Thr
TGT
[Ensembl]
¡û
>W1911155342
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2890351
2890276
-
Thr
TGT
[ENA]
¡û
>W1911244021
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1579022
1579097
+
Thr
TGT
[ENA]
¡û
>W1911244082
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2443437
2443362
-
Thr
TGT
[ENA]
¡û
>W1911244152
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
85423
85348
-
Thr
TGT
[ENA]
¡û
>W1911244159
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
131649
131724
+
Thr
TGT
[ENA]
¡û
>W1911244227
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2908133
2908058
-
Thr
TGT
[ENA]
¡û
>W1911572522
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
40692
40767
+
Thr
TGT
[ENA]
¡û
>W1911572605
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
782995
782920
-
Thr
TGT
[ENA]
¡û
>W1911572617
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
126526
126601
+
Thr
TGT
[ENA]
¡û
>W1810052256
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2499032
2499107
+
Thr
TGT
[ENA]
¡û
>W1810071875
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
80645
80720
+
Thr
TGT
[ENA]
¡û
>W1810071924
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1113170
1113245
+
Thr
TGT
[ENA]
¡û
>W1810072007
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
708366
708291
-
Thr
TGT
[ENA]
¡û
>W1810368032
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
571537
571462
-
Thr
TGT
[ENA]
¡û
>C10103655
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2382593
2382518
-
Thr
TGT
[Ensembl]
¡û
>C11105194
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
285379
285454
+
Thr
TGT
[Ensembl]
¡û
>C11105370
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
95017
95092
+
Thr
TGT
[Ensembl]
¡û
>C11105419
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
358216
358291
+
Thr
TGT
[Ensembl]
¡û
>C11105479
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2377066
2376991
-
Thr
TGT
[Ensembl]
¡û
>C11105861
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
2316980
2316905
-
Thr
TGT
[Ensembl]
¡û
>W11139402
AEKB01000033
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
1025
950
-
Thr
TGT
[ENA]
¡û
>W11139428
AEKC01000019
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
13995
13920
-
Thr
TGT
[ENA]
¡û
>W11139455
AEKD01000005
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
38776
38851
+
Thr
TGT
[ENA]
¡û
>W1511563981
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
72977
72902
-
Thr
TGT
[ENA]
¡û
>W1511563984
LACN01000001
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
76
151
+
Thr
TGT
[ENA]
¡û
>W1511563992
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
1261358
1261283
-
Thr
TGT
[ENA]
¡û
>W1511564038
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
538002
538077
+
Thr
TGT
[ENA]
¡û
>W1710603727
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
566746
566821
+
Thr
TGT
[ENA]
¡û
>W1710603825
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1890537
1890462
-
Thr
TGT
[ENA]
¡û
>W1710603910
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2844006
2843931
-
Thr
TGT
[ENA]
¡û
>W1710605075
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1900875
1900800
-
Thr
TGT
[ENA]
¡û
>W1710609649
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
491113
491188
+
Thr
TGT
[ENA]
¡û
>W1710609733
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
487365
487290
-
Thr
TGT
[ENA]
¡û
>W1710609783
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
87453
87378
-
Thr
TGT
[ENA]
¡û
>W1710609829
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
80198
80123
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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