This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460929 (86 seq.)
>W131108952
APGP01000063
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
25424
25349
-
Lys
TTT
[ENA]
¡û
>W131108957
APGP01000069
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
2961
2886
-
Lys
TTT
[ENA]
¡û
>W131218308
ATXO01000012
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
1387
1462
+
Lys
TTT
[ENA]
¡û
>W131218320
ATXO01000016
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
40298
40223
-
Lys
TTT
[ENA]
¡û
>C006902
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1405841
1405916
+
Lys
TTT
[Ensembl]
¡û
>C006910
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2742748
2742673
-
Lys
TTT
[Ensembl]
¡û
>WENV180014249
FPIC01113887
[FPIC] soil metagenome; Soil
80
5
-
Lys
TTT
[ENA]
¢þ
>WENV181226025
OFDK01000001
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
187648
187573
-
Lys
TTT
[ENA]
¢þ
>WENV181226158
OFDK01000118
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15915
15840
-
Lys
TTT
[ENA]
¢þ
>WENV181226259
OFDK01000393
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
7023
6948
-
Lys
TTT
[ENA]
¢þ
>WENV181285391
OFGS01000101
[OFGS] hot springs metagenome; Water and soil
18555
18480
-
Lys
TTT
[ENA]
¢þ
>WENV181285448
OFGS01000484
[OFGS] hot springs metagenome; Water and soil
2103
2178
+
Lys
TTT
[ENA]
¢þ
>C191131095
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
697810
697885
+
Lys
TTT
-
¡û
>C191131115
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2849874
2849799
-
Lys
TTT
-
¡û
>W09104533
AALW01000002
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
64710
64635
-
Lys
TTT
[ENA]
¡û
>W09104560
AALW01000066
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
918
843
-
Lys
TTT
[ENA]
¡û
>W09113810
ABYZ01000003
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
103178
103253
+
Lys
TTT
[ENA]
¡û
>W09113826
ABYZ01000009
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
71383
71458
+
Lys
TTT
[ENA]
¡û
>C09100818
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
66152
66227
+
Lys
TTT
[Ensembl]
¡û
>C09100844
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2322064
2321989
-
Lys
TTT
[Ensembl]
¡û
>W1911155321
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
242286
242361
+
Lys
TTT
[ENA]
¡û
>W1911155349
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2475271
2475196
-
Lys
TTT
[ENA]
¡û
>W1911244028
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1995725
1995800
+
Lys
TTT
[ENA]
¡û
>W1911244047
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1324522
1324447
-
Lys
TTT
[ENA]
¡û
>W1911244078
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2699422
2699497
+
Lys
TTT
[ENA]
¡û
>W1911244089
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2028354
2028279
-
Lys
TTT
[ENA]
¡û
>W1911244109
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
341409
341484
+
Lys
TTT
[ENA]
¡û
>W1911244130
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2581322
2581247
-
Lys
TTT
[ENA]
¡û
>W1911244166
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
546732
546807
+
Lys
TTT
[ENA]
¡û
>W1911244186
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
2763825
2763750
-
Lys
TTT
[ENA]
¡û
>W1911244205
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
243121
243196
+
Lys
TTT
[ENA]
¡û
>W1911244234
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2491434
2491359
-
Lys
TTT
[ENA]
¡û
>W1911572529
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
457396
457471
+
Lys
TTT
[ENA]
¡û
>W1911572549
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
2701997
2701922
-
Lys
TTT
[ENA]
¡û
>W1911572573
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1037026
1037101
+
Lys
TTT
[ENA]
¡û
>W1911572612
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
367923
367848
-
Lys
TTT
[ENA]
¡û
>W1911572624
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
541610
541685
+
Lys
TTT
[ENA]
¡û
>W1911572644
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2790608
2790533
-
Lys
TTT
[ENA]
¡û
>W1810052234
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
13746
13821
+
Lys
TTT
[ENA]
¡û
>W1810052263
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2244930
2244855
-
Lys
TTT
[ENA]
¡û
>W1810071882
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
495729
495804
+
Lys
TTT
[ENA]
¡û
>W1810071902
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
2744722
2744647
-
Lys
TTT
[ENA]
¡û
>W1810071931
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1529854
1529929
+
Lys
TTT
[ENA]
¡û
>W1810071958
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
858619
858544
-
Lys
TTT
[ENA]
¡û
>W1810071974
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
963187
963262
+
Lys
TTT
[ENA]
¡û
>W1810072014
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
291675
291600
-
Lys
TTT
[ENA]
¡û
>W1810367994
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
826165
826240
+
Lys
TTT
[ENA]
¡û
>W1810368039
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
154831
154756
-
Lys
TTT
[ENA]
¡û
>C10103621
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
49082
49157
+
Lys
TTT
[Ensembl]
¡û
>C10103660
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2125029
2124954
-
Lys
TTT
[Ensembl]
¡û
>C11105190
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
31189
31264
+
Lys
TTT
[Ensembl]
¡û
>C11105199
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
618523
618598
+
Lys
TTT
[Ensembl]
¡û
>C11105377
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
434316
434391
+
Lys
TTT
[Ensembl]
¡û
>C11105385
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
2587321
2587246
-
Lys
TTT
[Ensembl]
¡û
>C11105415
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
60474
60549
+
Lys
TTT
[Ensembl]
¡û
>C11105424
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
567404
567479
+
Lys
TTT
[Ensembl]
¡û
>C11105475
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2489261
2489186
-
Lys
TTT
[Ensembl]
¡û
>C11105484
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2070381
2070306
-
Lys
TTT
[Ensembl]
¡û
>C11105866
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1975865
1975790
-
Lys
TTT
[Ensembl]
¡û
>W11139378
AEKB01000003
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
97620
97545
-
Lys
TTT
[ENA]
¡û
>W11139379
AEKB01000004
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
18764
18689
-
Lys
TTT
[ENA]
¡û
>W11139422
AEKC01000014
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
25629
25704
+
Lys
TTT
[ENA]
¡û
>W11139444
AEKC01000052
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
4312
4387
+
Lys
TTT
[ENA]
¡û
>W11139463
AEKD01000008
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
7278
7353
+
Lys
TTT
[ENA]
¡û
>W11139472
AEKD01000020
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
28296
28371
+
Lys
TTT
[ENA]
¡û
>W1511563938
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
279698
279773
+
Lys
TTT
[ENA]
¡û
>W1511563959
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2574037
2573962
-
Lys
TTT
[ENA]
¡û
>W1511563998
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
995466
995391
-
Lys
TTT
[ENA]
¡û
>W1511564027
LACN01000012
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
175365
175440
+
Lys
TTT
[ENA]
¡û
>W1511564043
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
821578
821653
+
Lys
TTT
[ENA]
¡û
>W1710603732
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
981667
981742
+
Lys
TTT
[ENA]
¡û
>W1710603769
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
316245
316170
-
Lys
TTT
[ENA]
¡û
>W1710603811
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2141038
2141113
+
Lys
TTT
[ENA]
¡û
>W1710603830
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1475614
1475539
-
Lys
TTT
[ENA]
¡û
>W1710603889
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
162259
162334
+
Lys
TTT
[ENA]
¡û
>W1710603917
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2428921
2428846
-
Lys
TTT
[ENA]
¡û
>W1710605069
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
2149194
2149269
+
Lys
TTT
[ENA]
¡û
>W1710605080
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1487570
1487495
-
Lys
TTT
[ENA]
¡û
>W1710609654
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
900310
900385
+
Lys
TTT
[ENA]
¡û
>W1710609691
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
240612
240537
-
Lys
TTT
[ENA]
¡û
>W1710609720
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2552508
2552433
-
Lys
TTT
[ENA]
¡û
>W1710609740
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
73326
73251
-
Lys
TTT
[ENA]
¡û
>W1710609741
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
337889
337964
+
Lys
TTT
[ENA]
¡û
>W1710609761
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2594001
2593926
-
Lys
TTT
[ENA]
¡û
>W1710609786
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
330633
330708
+
Lys
TTT
[ENA]
¡û
>W1710609807
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2586544
2586469
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK