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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460954 (41 seq.)
>W131108950
APGP01000053
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
48529
48454
-
Gly
GCC
[ENA]
¡û
>W131218330
ATXO01000022
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
15468
15543
+
Gly
GCC
[ENA]
¡û
>C006898
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1020694
1020769
+
Gly
GCC
[Ensembl]
¡û
>WENV180014148
FPIC01068128
[FPIC] soil metagenome; Soil
58
131
+
Gly
GCC
[ENA]
¢þ
>WENV181285480
OFGS01000862
[OFGS] hot springs metagenome; Water and soil
1154
1229
+
Gly
GCC
[ENA]
¢þ
>WENV181285503
OFGS01001181
[OFGS] hot springs metagenome; Water and soil
1945
1870
-
Gly
GCC
[ENA]
¢þ
>C191131126
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2126590
2126515
-
Gly
GCC
-
¡û
>W09104553
AALW01000061
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
371
296
-
Gly
GCC
[ENA]
¡û
>W09113820
ABYZ01000004
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
170595
170520
-
Gly
GCC
[ENA]
¡û
>C09100827
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
844025
844100
+
Gly
GCC
[Ensembl]
¡û
>W1911155330
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1026679
1026754
+
Gly
GCC
[ENA]
¡û
>W1911244016
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
184130
184205
+
Gly
GCC
[ENA]
¡û
>W1911244068
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
572872
572947
+
Gly
GCC
[ENA]
¡û
>W1911244118
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1125833
1125908
+
Gly
GCC
[ENA]
¡û
>W1911244195
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1976177
1976102
-
Gly
GCC
[ENA]
¡û
>W1911244249
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1383511
1383436
-
Gly
GCC
[ENA]
¡û
>W1911572558
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1915971
1915896
-
Gly
GCC
[ENA]
¡û
>W1911572582
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1821382
1821457
+
Gly
GCC
[ENA]
¡û
>W1911572653
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2006464
2006389
-
Gly
GCC
[ENA]
¡û
>W1810052272
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1460517
1460442
-
Gly
GCC
[ENA]
¡û
>W1810071911
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1960442
1960367
-
Gly
GCC
[ENA]
¡û
>W1810071967
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
74378
74303
-
Gly
GCC
[ENA]
¡û
>W1810071983
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
1747426
1747501
+
Gly
GCC
[ENA]
¡û
>W1810368003
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1610437
1610512
+
Gly
GCC
[ENA]
¡û
>C11105226
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1971005
1970930
-
Gly
GCC
[Ensembl]
¡û
>C11105392
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
2028607
2028532
-
Gly
GCC
[Ensembl]
¡û
>C11105451
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
2066465
2066390
-
Gly
GCC
[Ensembl]
¡û
>C11105465
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
462170
462245
+
Gly
GCC
[Ensembl]
¡û
>W11139385
AEKB01000006
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
14561
14636
+
Gly
GCC
[ENA]
¡û
>W11139414
AEKC01000009
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
33271
33346
+
Gly
GCC
[ENA]
¡û
>W11139485
AEKD01000045
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
5190
5115
-
Gly
GCC
[ENA]
¡û
>W1511563947
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1046724
1046799
+
Gly
GCC
[ENA]
¡û
>W1511564017
LACN01000009
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
19932
20007
+
Gly
GCC
[ENA]
¡û
>W1710603759
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2459922
2459847
-
Gly
GCC
[ENA]
¡û
>W1710603820
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2918916
2918991
+
Gly
GCC
[ENA]
¡û
>W1710603898
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
946682
946757
+
Gly
GCC
[ENA]
¡û
>W1710605059
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
9319
9394
+
Gly
GCC
[ENA]
¡û
>W1710609681
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2378565
2378490
-
Gly
GCC
[ENA]
¡û
>W1710609712
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1083555
1083630
+
Gly
GCC
[ENA]
¡û
>W1710609750
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1115750
1115825
+
Gly
GCC
[ENA]
¡û
>W1710609795
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1108506
1108581
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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