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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460966 (39 seq.)
>W131218293
ATXO01000003
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
9735
9660
-
Glu
CTC
[ENA]
¡û
>WENV180014101
FPIC01055975
[FPIC] soil metagenome; Soil
7191
7266
+
Glu
CTC
[ENA]
¢þ
>WENV181226111
OFDK01000053
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
8975
8900
-
Glu
CTC
[ENA]
¢þ
>WENV181285345
OFGS01000012
[OFGS] hot springs metagenome; Water and soil
9410
9335
-
Glu
CTC
[ENA]
¢þ
>WENV181408543
OGCH01005010
[OGCH] hot springs metagenome; hot springs
107
182
+
Glu
CTC
[ENA]
¢þ
>W09113823
ABYZ01000006
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
121221
121296
+
Glu
CTC
[ENA]
¡û
>C09100848
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1805654
1805579
-
Glu
CTC
[Ensembl]
¡û
>W1911155353
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1973416
1973341
-
Glu
CTC
[ENA]
¡û
>W1911244032
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2495962
2496037
+
Glu
CTC
[ENA]
¡û
>W1911244093
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1510571
1510496
-
Glu
CTC
[ENA]
¡û
>W1911244134
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2063537
2063462
-
Glu
CTC
[ENA]
¡û
>W1911244170
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1056224
1056299
+
Glu
CTC
[ENA]
¡û
>W1911244238
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1974491
1974416
-
Glu
CTC
[ENA]
¡û
>W1911572533
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
976131
976206
+
Glu
CTC
[ENA]
¡û
>W1911572587
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2767686
2767611
-
Glu
CTC
[ENA]
¡û
>W1911572628
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1071464
1071539
+
Glu
CTC
[ENA]
¡û
>W1810052238
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
525511
525586
+
Glu
CTC
[ENA]
¡û
>W1810071886
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1011874
1011949
+
Glu
CTC
[ENA]
¡û
>W1810071935
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2044343
2044418
+
Glu
CTC
[ENA]
¡û
>W1810071989
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2695965
2695890
-
Glu
CTC
[ENA]
¡û
>W1810368014
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2559008
2558933
-
Glu
CTC
[ENA]
¡û
>C10103633
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
988881
988956
+
Glu
CTC
[Ensembl]
¡û
>C11105203
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1052789
1052864
+
Glu
CTC
[Ensembl]
¡û
>C11105395
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1799382
1799307
-
Glu
CTC
[Ensembl]
¡û
>C11105428
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1160154
1160229
+
Glu
CTC
[Ensembl]
¡û
>C11105489
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1202369
1202294
-
Glu
CTC
[Ensembl]
¡û
>C11105870
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1540607
1540532
-
Glu
CTC
[Ensembl]
¡û
>W11139389
AEKB01000007
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
108636
108711
+
Glu
CTC
[ENA]
¡û
>W11139410
AEKC01000007
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
75999
76074
+
Glu
CTC
[ENA]
¡û
>W11139475
AEKD01000026
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
29668
29743
+
Glu
CTC
[ENA]
¡û
>W1511564045
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1141363
1141438
+
Glu
CTC
[ENA]
¡û
>W1710603736
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1498077
1498152
+
Glu
CTC
[ENA]
¡û
>W1710603834
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
959204
959129
-
Glu
CTC
[ENA]
¡û
>W1710603921
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1907656
1907581
-
Glu
CTC
[ENA]
¡û
>W1710605084
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
971160
971085
-
Glu
CTC
[ENA]
¡û
>W1710609658
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1416720
1416795
+
Glu
CTC
[ENA]
¡û
>W1710609696
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
814636
814711
+
Glu
CTC
[ENA]
¡û
>W1710609765
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2077592
2077517
-
Glu
CTC
[ENA]
¡û
>W1710609811
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2070135
2070060
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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